| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1425 |
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| Symbol | |
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| ID | 6160217 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 1506535 |
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| End bp | 1507680 |
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| Gene Length | 1146 bp |
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| Protein Length | 381 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641664179 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001790458 |
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| Protein GI | 171058109 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAACCAA CGTCCACCCC CCTCTCACCA GACGCGAGAC CCGACTGGCG CGGCGTTCGC
ACGGTGGCCC AAACTTTGAA CGACTTCCGC ACCTGTATCG CTGTGCTGGT GTTCTACCTC
ATCGATGCGG GCCTCATGGC ATTGTTTTGC GCGTTCGGCG CCGGCAACTG GGCCTCTCCG
ATGTGGATCG CTGGTACAGG ACTGGTGGTC GCCGGTGGGG GCGCCGTCCT GGTGCACCGC
TTCGGCGGAG GGCGCTTGGA CGACCCTCGG CTGGTGATCG TGCAGGCCGG GTCGGCACTG
GTTGTGACGC TGGGCGTGGC ATTGTTCGAT CCGCCACTCA TGGCCCTGAT GCTGATGACG
GTGATCGTGA TCATCCCGAC CGCGGCGCTG CGCCTTGCGC CGGGCGGCCT GCTTTCGCTT
TGCATGGTGG CTGCGGTGGC CTCCTTCGCG GTGGTGGCTG CCCACGGCGG CCGGCTGACG
ATCCCCGCCG ACACCGCGGC GCAGCAAGCG CTCAGCGGGA TGTTTCTGCT CTGGACGCTG
GTCAAAGGCG CCAGCATCAA CCTGGCCGGC ATGGCGCTGC GCATGGAACT CAACGACAGC
CACGAACGCC TGGCCGCCGC GCTGTTGCGT GTCGAGCAAC TGGCTGAACG GGACGAGTTG
ACGGGCCTGC CCAACCGGCG CCGCATGCAG GCCGCGCTGG CTGAGGAACG TGAACGCTGC
AGCCGCAACG GCGTCAGCTT CTCGGTGGCG ATGCTGGACA TCGACCACTT CAAGCGCATC
AACGACCTGT ATGGCCACCC GATGGGCGAC GCGGTCTTAC GGTCGGTGGC CCAGCTGATG
AGAACCGCAT TGCGCAAGCC AGACCTCGTC GGCAGAGTGG GCGGCGAGGA GTTCCTGATG
ATCCTGCCCG GGGCTGCGCG CCTCGAGGAA GCGAAGCATG TCGTGGAGCG GGTGCGCGCG
GCGATCGAAG GCAACGACTG GTCAGCGACG AGGGCCGACC TGCAGGTCAC AGCATCGATC
GGCGTCGCGG TTGGCGAGCC GGGTGAGTCG GTGGAAAGCC TTTTCGACCG GGCCGATCGC
GGCCTTTATC TCGCCAAGCA GGGTGGCCGC AACCAGGTCG CAGCCGACAC ACCTCGGCCG
CACTGA
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| Protein sequence | MQPTSTPLSP DARPDWRGVR TVAQTLNDFR TCIAVLVFYL IDAGLMALFC AFGAGNWASP
MWIAGTGLVV AGGGAVLVHR FGGGRLDDPR LVIVQAGSAL VVTLGVALFD PPLMALMLMT
VIVIIPTAAL RLAPGGLLSL CMVAAVASFA VVAAHGGRLT IPADTAAQQA LSGMFLLWTL
VKGASINLAG MALRMELNDS HERLAAALLR VEQLAERDEL TGLPNRRRMQ AALAEERERC
SRNGVSFSVA MLDIDHFKRI NDLYGHPMGD AVLRSVAQLM RTALRKPDLV GRVGGEEFLM
ILPGAARLEE AKHVVERVRA AIEGNDWSAT RADLQVTASI GVAVGEPGES VESLFDRADR
GLYLAKQGGR NQVAADTPRP H
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