Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_1425 |
Symbol | |
ID | 6160217 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 1506535 |
End bp | 1507680 |
Gene Length | 1146 bp |
Protein Length | 381 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 641664179 |
Product | diguanylate cyclase |
Protein accession | YP_001790458 |
Protein GI | 171058109 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 38 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAACCAA CGTCCACCCC CCTCTCACCA GACGCGAGAC CCGACTGGCG CGGCGTTCGC ACGGTGGCCC AAACTTTGAA CGACTTCCGC ACCTGTATCG CTGTGCTGGT GTTCTACCTC ATCGATGCGG GCCTCATGGC ATTGTTTTGC GCGTTCGGCG CCGGCAACTG GGCCTCTCCG ATGTGGATCG CTGGTACAGG ACTGGTGGTC GCCGGTGGGG GCGCCGTCCT GGTGCACCGC TTCGGCGGAG GGCGCTTGGA CGACCCTCGG CTGGTGATCG TGCAGGCCGG GTCGGCACTG GTTGTGACGC TGGGCGTGGC ATTGTTCGAT CCGCCACTCA TGGCCCTGAT GCTGATGACG GTGATCGTGA TCATCCCGAC CGCGGCGCTG CGCCTTGCGC CGGGCGGCCT GCTTTCGCTT TGCATGGTGG CTGCGGTGGC CTCCTTCGCG GTGGTGGCTG CCCACGGCGG CCGGCTGACG ATCCCCGCCG ACACCGCGGC GCAGCAAGCG CTCAGCGGGA TGTTTCTGCT CTGGACGCTG GTCAAAGGCG CCAGCATCAA CCTGGCCGGC ATGGCGCTGC GCATGGAACT CAACGACAGC CACGAACGCC TGGCCGCCGC GCTGTTGCGT GTCGAGCAAC TGGCTGAACG GGACGAGTTG ACGGGCCTGC CCAACCGGCG CCGCATGCAG GCCGCGCTGG CTGAGGAACG TGAACGCTGC AGCCGCAACG GCGTCAGCTT CTCGGTGGCG ATGCTGGACA TCGACCACTT CAAGCGCATC AACGACCTGT ATGGCCACCC GATGGGCGAC GCGGTCTTAC GGTCGGTGGC CCAGCTGATG AGAACCGCAT TGCGCAAGCC AGACCTCGTC GGCAGAGTGG GCGGCGAGGA GTTCCTGATG ATCCTGCCCG GGGCTGCGCG CCTCGAGGAA GCGAAGCATG TCGTGGAGCG GGTGCGCGCG GCGATCGAAG GCAACGACTG GTCAGCGACG AGGGCCGACC TGCAGGTCAC AGCATCGATC GGCGTCGCGG TTGGCGAGCC GGGTGAGTCG GTGGAAAGCC TTTTCGACCG GGCCGATCGC GGCCTTTATC TCGCCAAGCA GGGTGGCCGC AACCAGGTCG CAGCCGACAC ACCTCGGCCG CACTGA
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Protein sequence | MQPTSTPLSP DARPDWRGVR TVAQTLNDFR TCIAVLVFYL IDAGLMALFC AFGAGNWASP MWIAGTGLVV AGGGAVLVHR FGGGRLDDPR LVIVQAGSAL VVTLGVALFD PPLMALMLMT VIVIIPTAAL RLAPGGLLSL CMVAAVASFA VVAAHGGRLT IPADTAAQQA LSGMFLLWTL VKGASINLAG MALRMELNDS HERLAAALLR VEQLAERDEL TGLPNRRRMQ AALAEERERC SRNGVSFSVA MLDIDHFKRI NDLYGHPMGD AVLRSVAQLM RTALRKPDLV GRVGGEEFLM ILPGAARLEE AKHVVERVRA AIEGNDWSAT RADLQVTASI GVAVGEPGES VESLFDRADR GLYLAKQGGR NQVAADTPRP H
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