| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1397 |
|---|
| Symbol | |
|---|
| ID | 6159922 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 1484182 |
|---|
| End bp | 1485240 |
|---|
| Gene Length | 1059 bp |
|---|
| Protein Length | 352 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641664151 |
|---|
| Product | oxidoreductase domain-containing protein |
|---|
| Protein accession | YP_001790430 |
|---|
| Protein GI | 171058081 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0673] Predicted dehydrogenases and related proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 52 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGACA ACGCCGTGAG CTCCTGCGAC ATCAACATCG GCATCATCGG TTACGGCTAT
TGGGGCCCCA ACCTGGTCCG CAACTTTGCC GAGACACCCG GAGCCCGCGT TGCGGCGGTG
TCCGATCTCG ATCCGGCCAG ACTGGCGATG GTGCCGCGGC GCTTTCCGAC CGTGCGGACC
ACGACCGATT TCCGCGCGCT GCTCGACGAT CCGGACATCG ACGCCATCGC CATCGCCACC
CCCGTGCACA CGCACTTCGA GCTGGCCCGC GCGGCGCTGA GTGCCGACAA GCACGTGTGG
CTGGAAAAGC CCATGACCGA GCGCTGCAGC CAGGCCCGCG AGCTCATTGC GCTGGCGCAG
CAGCACCGCC GCGTGCTGCT GGTCGACCAC ACCTTCATCT ACACCGGCGC GGTGGCCAAG
ATGCACGAGC TGATCCGCAG CGGCGAGCTC GGGCGCATCT ACTACTACGA CTCGATTCGC
GTCAACCTCG GGCTGTTCCA GCGTGACGTG AGCGTGATCG CCGACCTCGC GGTGCACGAC
TTCTCGATCC TCGACTACCT GCTGGGTGAA CACCCGGTGG CGGTGACGTC CAGCGGCACC
AACCACTTTC CGGGCACGCC GGAGAACCTC GCCTACGTGA CGCTGTTCTA CGAGTCCGGC
ACCATCGCGC ACGCCAATGT CAGCTGGCTC GCGCCGGTCA AGGTGCGGCA GATCCTGGTG
GGTGGCAGCA AGAAGATGAT CACCTACGAC GACCTCGAGC CCAGCGAGAA GATCAAGGTC
TACGACAAGG GCGTGAGCTT CGTCGACGAC CCCGAGAAGA TCCACGAGAT GCGCGTGGGC
TACCGCACCG GCGACATGTG GGCGCCCAAG CTGGCGGTGA CCGAAGCGCT GCGGGTCGAG
GGCGAACACT TCGTCGACTG CATCGTCAAT CACAGGACGC CCAGGACCGA CGGACAGCTG
GGCCTGCGGG TGGTCGAGCT CATCGAGGCG GCCAGCGCGT CGATGCGCCA CAAGGGCGAG
ACCGTCTACA TCACGCACGA ACGGGAGATT GCATCGTGA
|
|---|
| Protein sequence | MKDNAVSSCD INIGIIGYGY WGPNLVRNFA ETPGARVAAV SDLDPARLAM VPRRFPTVRT
TTDFRALLDD PDIDAIAIAT PVHTHFELAR AALSADKHVW LEKPMTERCS QARELIALAQ
QHRRVLLVDH TFIYTGAVAK MHELIRSGEL GRIYYYDSIR VNLGLFQRDV SVIADLAVHD
FSILDYLLGE HPVAVTSSGT NHFPGTPENL AYVTLFYESG TIAHANVSWL APVKVRQILV
GGSKKMITYD DLEPSEKIKV YDKGVSFVDD PEKIHEMRVG YRTGDMWAPK LAVTEALRVE
GEHFVDCIVN HRTPRTDGQL GLRVVELIEA ASASMRHKGE TVYITHEREI AS
|
|---|
| |