Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_1392 |
Symbol | |
ID | 6160306 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 1477502 |
End bp | 1480084 |
Gene Length | 2583 bp |
Protein Length | 860 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 641664146 |
Product | hypothetical protein |
Protein accession | YP_001790425 |
Protein GI | 171058076 |
COG category | [S] Function unknown |
COG ID | [COG1817] Uncharacterized protein conserved in archaea |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 44 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCGTCA CCGCCGCCAC CGATCCCAAC CCGCCGCAGC CCCTGAGCGC CAGTTCATAC CGCGACATCC TCCACTCGAC GCTGCTGATC GGCGGTTCGA CCGCCGTGAG GGTGCTGATC GGCATTGCCC GCACCAAGGT CATGGCGGTG CTGCTCGGCC CGGCGGGTGT CGGCCTGATG GGGGTCTACC TGTCGATCAT CGACCTGACC CACAGCGTGG CCGGCATGGG CATCAACAAC AGCGGCGTGC GCCAGATCGC CGAGTCGGCC GCTTCAGGCG ACGCCCTGCG GATGGCCCAG ACCATCGTCG TGCTGCGCCG GGTCGCGGTG GCGCTGGGCA TCTTCGGGGG CCTGCTGCTG ATCCTGCTGG CGCGGCCGAT CGCACAGGCC ACCTTCGGCA ATGACGCCCA CGCCACGGCC GTGGCCGTGC TGTCGCTGGC GGTGTTCCTG CGGCTCGTGT CGGACGGCCA GGGGGCGCTG ATCCAGGGCA TGCGACGCAT CGCCGACCTG GCCCGCATCA GCGTGCTGGG CGCGCTGTGC GGCACGCTGG CCAGCATCCC GTTTGTCTAC TACCTCGGCC AGGACGGCGT GGTGCCCGCA CTGGTGACGG TGACGGCGCT GACCGCCGCG ACCTTCTGGT GGTACAGCCA GAAGGTGCAC ATCGAACCGT GTGTGCTGTC GCATGCGCAG ATCCGCCACG AAGCGACCGC GCTGCTCAAG CTCGGCTTCG CCTTCATGGC CAGCGGGCTG CTGATCACGG CCGCGGCCTA CATCGTGCGG CTGTTCGTGC TGCGCCAGGC CGGGCTGGGT GCGGCCGGCC TGTACCAGGC TGCCTGGACC CTGGGCGGGC TCTACACCGG CTTCATCCTG CACGCCATGG GGACCGACTT CTATCCGCGC CTGGTCGGTG TCATCACCGA CAACGGCCGC GCCAACCAGA TGGTCAACCA GCAGGCGCAG ATCAGCCTGC TGCTGGCCGC GCCGGGCGTG ATCGCGACGC TGACCTTCGC CTCGCTCGTG ATCGCCTTGT TCTACACCGC CGAGTTCAGC GCCGCCATCG ACGTGCTGCG CTGGATCTGC CTGGGCATGG CGCTGCGCGT GATCACCTGG CCGATGGGCT ACATCATCGT CGCCACAAAC CGGCAGGCGC TGTTCTTCGG CGTCGAGCTG GCCTGGACGC TCGCCAATGT CGGCCTGTCG TGGTGGTGCG TGCAGCGCTT CGGCTTGAAC GGTGCCGGCA TCGCCTTCTT CGGCTCGTAC GTGTTTCACG GCCTGGTGGT CTATGCGGTG GTGCGTCGCC TGACCGGCTT CCGCTGGTCA CGCGTGAATG CACGCACCGG CCTGCTGTTC ATCAGCGCCA TCGGCCTGGT GTTCGTCGGT TTCCAGCTCC TGCCGCCGAT GTGGGCCATC GGCATGGGCA CGCTGGCGAT GCTCGTCAGC AGCGGCTACG CGCTGCAGGT GCTGCTCGTG CTGGTGCCGC CGCAACAGCT GCCCGGCCCC CTGCGGCATC TGCGGCATCT GCGGCGCCGA GATGCGGCCA GCCAGGGTCG GGCCCGCCAG ATCTGGATCG ATCTCGACAA CTCGCCTCAC GTGCCCTTCT TCCGGCCGAT CGTCGATGAA CTGCGTGGCC AGGGCTACAC GGTGCTGCTG ACCGCGCGCG ACGCCTTCCA GGTCACCGAC CTGGCCCGGC TCAACCAGAT GCCCTGCATC ACCGTCGGTC GTCATTTCGG CAAGAACAAG CTGATGAAGG CACTCGGCCT GCTGGTCCGC GCCGCCCAGC TGCTGCCGCT GATCGTGCGC AACCGGCCCG ACCTGGCGGT GTCGCACGGC TCGCGCGCGC AGATCATGGC GGCGCGCCTG CTGGGCATTC CGGCGGTGGT GATCGCCGAC TACGAACACG TGACCCACGT CAATCGGGCC GACGTGATGA TCGTTCCGGA GATCATTCCG AGCGACGTGG CCGGCCGCTT CGCCGACCGG GTGTTCAAGT ACCCGGGTAT CAAGGAGGAC GTCTACGCCG CGGCCTTCAA GCCCGATCCG GCGATCGTCG AGGAGCTGGG CCTGGCGGCT GACAAGATCG TCGTCACCGT GCGCCCGCCC GCGACCGAAG CGCACTACCA CAACCCCGAG AGCGAGGCGC TGTTCGCCGC CGTGATCGAG CTGCTGGCGC AGGACGCGCG GGTGCAGGTG GTCCTGCTGC CTCGTAATCA GCGCCAGGGC GAGCAGATCG CCCGGCAATG GCCCGAGCAT CTGGCCAGCG GCAAGATGAG CATTCCGGGC CGGGCGGTGG ACGGCCTGAA CCTGGTCTGG CACTCCGACC TCGTCATCAG CGGCGGCGGC ACCATGAACC GCGAAGCCGC CGCGCTGGGG GTGCCGGTCT ACAGCATCTT CCGCGGCCCC ATCGGCGCGG TCGACCGCTA CCTGGTCGAA CAGGGCCGCC TGGTGATGCT CGAAAGCATC GAGGACGTAC GCACGCGCAT CGACCTCACC CAACGGCACC GGGTGCCACC CGTGGCCCAT GCCGAGCGCA GCGCGCTGCA CACCATCGTC GACCAGATCG CCCGCATCGC CCGAGGTGAA TGA
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Protein sequence | MPVTAATDPN PPQPLSASSY RDILHSTLLI GGSTAVRVLI GIARTKVMAV LLGPAGVGLM GVYLSIIDLT HSVAGMGINN SGVRQIAESA ASGDALRMAQ TIVVLRRVAV ALGIFGGLLL ILLARPIAQA TFGNDAHATA VAVLSLAVFL RLVSDGQGAL IQGMRRIADL ARISVLGALC GTLASIPFVY YLGQDGVVPA LVTVTALTAA TFWWYSQKVH IEPCVLSHAQ IRHEATALLK LGFAFMASGL LITAAAYIVR LFVLRQAGLG AAGLYQAAWT LGGLYTGFIL HAMGTDFYPR LVGVITDNGR ANQMVNQQAQ ISLLLAAPGV IATLTFASLV IALFYTAEFS AAIDVLRWIC LGMALRVITW PMGYIIVATN RQALFFGVEL AWTLANVGLS WWCVQRFGLN GAGIAFFGSY VFHGLVVYAV VRRLTGFRWS RVNARTGLLF ISAIGLVFVG FQLLPPMWAI GMGTLAMLVS SGYALQVLLV LVPPQQLPGP LRHLRHLRRR DAASQGRARQ IWIDLDNSPH VPFFRPIVDE LRGQGYTVLL TARDAFQVTD LARLNQMPCI TVGRHFGKNK LMKALGLLVR AAQLLPLIVR NRPDLAVSHG SRAQIMAARL LGIPAVVIAD YEHVTHVNRA DVMIVPEIIP SDVAGRFADR VFKYPGIKED VYAAAFKPDP AIVEELGLAA DKIVVTVRPP ATEAHYHNPE SEALFAAVIE LLAQDARVQV VLLPRNQRQG EQIARQWPEH LASGKMSIPG RAVDGLNLVW HSDLVISGGG TMNREAAALG VPVYSIFRGP IGAVDRYLVE QGRLVMLESI EDVRTRIDLT QRHRVPPVAH AERSALHTIV DQIARIARGE
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