Gene Lcho_1379 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1379 
Symbol 
ID6159761 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp1463222 
End bp1464553 
Gene Length1332 bp 
Protein Length443 aa 
Translation table11 
GC content65% 
IMG OID641664133 
Producthypothetical protein 
Protein accessionYP_001790412 
Protein GI171058063 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones49 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGATCT TCACCCAGCT ATTGGCCCTG GTCATCCTGT TTGCCGCCCA GTCGGCGATC 
GCCAAGAACA ACTACGTCAG AGCCGGCGCC ACCGGTGCCA ACAACGGCAG CGACTGGACC
AACGCCTACG CGTCGCTGCC GGCCACGCTG GTGCGCGGCG ACACCTACTA CATCGCCGAC
GGCAGCTACG CCGGCCGCAC GTTCTCGACG CCGGTCAGCG GCACCACGCC CATCATCATC
AAGAAGGCGA CGCTGGCCGA TCACGGCATC GCGACCGGCT GGAGCGATTC ATATGGCGAC
GGTCAGGCCG CCTTCACCAG CGGACTGGTC TTCACCTCGT CGTACTGGAC CCTCGACGGC
CAGACCGGCG GTGGCGCCGT CAACAGCTGG GTGCAGAACT TCGGCTTCAA GATCACCGAG
ACCCGCGACG GCAACGCCGT CATCAAGATC GGCCAGGGGG TCACGGCCAA CAACATCACG
ATCCGGCACG TCGATCTGCA GGGCAAGGGC AGCGTCAGCA ACCTGGGTGG CTCGGCGTCG
AACGACGGTC TGGCGATCTA CGGCGCGTCG GACGTCACCC TGTCCCATTT CCGGATGGTC
GGCATCGGCC GCTGCCCGTT CTTCGTCAGC CCGCGCAACC TGGTGGTCGA GCATGGCTGG
GTCCAATCCT ATTTCGGCTC GGCCGCCGTG CATTCCGAAG TGGCCAGCAT CTGGGGGTTT
GCCGGCGCCG TCGGTGACGT GACCTTCCGC CACAACCTGT TCACCGACAT TCAAAGCACC
GGCGGCATCA TGTGGGACAA CTCGTCCAAC AACAGCGCCC GCCTGAATGT CTACGGCAAC
GTCTTCTACA AGCCTGCCGG TGCCAGCTGG GGCCGTGCCA ACGGCGTGGT CGGCGGCTGG
ACGGGCGGTG GTGGCGAGCA GTTCCGCAAT GCGTCGGTCT ACAACAACTC CTTCATCAAC
GTCGACCAGG AAAGCCTGAG CACGCTGCCC AACGTCTATT CCGGCAACGT CGCCCACAAC
AACATCTTCT ACAACAGCAG CAGCCCCAAC TTCGCCAAGT TCGGCGCTCA CAACCACAAC
CACTTCATCA ATTCCGGCGG CAACCACTCG GAAGCCAACG GCACCAGCGC GGCCAGCGGC
GATCCGTTCG TCAATGTCGC CGGACTGGAC TTCCGCCTGA AGGCCGCCAC GGCCGCAGGC
CTGACCCTGG CAGCGCCCTT CAACGTGGAT GCGCTGGGCA AGACCCGCGG TGCTGACGGC
ACCAGCGATC GCGGCGCCTT CGAGTTCGGT GGGGCGTCAC TGTCGGCTCC GGCCAATCTG
CAGGTCCAGT GA
 
Protein sequence
MKIFTQLLAL VILFAAQSAI AKNNYVRAGA TGANNGSDWT NAYASLPATL VRGDTYYIAD 
GSYAGRTFST PVSGTTPIII KKATLADHGI ATGWSDSYGD GQAAFTSGLV FTSSYWTLDG
QTGGGAVNSW VQNFGFKITE TRDGNAVIKI GQGVTANNIT IRHVDLQGKG SVSNLGGSAS
NDGLAIYGAS DVTLSHFRMV GIGRCPFFVS PRNLVVEHGW VQSYFGSAAV HSEVASIWGF
AGAVGDVTFR HNLFTDIQST GGIMWDNSSN NSARLNVYGN VFYKPAGASW GRANGVVGGW
TGGGGEQFRN ASVYNNSFIN VDQESLSTLP NVYSGNVAHN NIFYNSSSPN FAKFGAHNHN
HFINSGGNHS EANGTSAASG DPFVNVAGLD FRLKAATAAG LTLAAPFNVD ALGKTRGADG
TSDRGAFEFG GASLSAPANL QVQ