| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1366 |
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| Symbol | |
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| ID | 6159772 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 1449189 |
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| End bp | 1450343 |
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| Gene Length | 1155 bp |
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| Protein Length | 384 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641664120 |
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| Product | homocitrate synthase |
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| Protein accession | YP_001790399 |
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| Protein GI | 171058050 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
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| TIGRFAM ID | [TIGR02660] homocitrate synthase NifV |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 52 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTACGCCC CCACCCATTT GCCGTTCACC CTCAACGACA CGACGTTGCG CGACGGCGAG
CAGACCGCGG GCGTGGCCTT CACGGATCAG GAAAAGCTCG CCATCGCACG CGCCCTCGAC
CTGGCCGGCG TGCCCGAGAT GGAGGTCGGC GCCGCGGCGA TGGGCGAGGC CGAGATCGAC
CTGATCCGCG CCATCACGCA GTCGGGCCTG AAGGCGCGCA CGATGGTGTG GGCGCGCATG
TCCGAGCTCG ACCTGCGGTC GGCCGCACGC TGTGGTGCGG ATCTCGTGCA TCTGGCCGTG
CCGGTGTCGG ACCTGCAGAT CGAACGCAAG CTCGGCCGCG ATCGCGGCTG GGTGCTGGGC
ATGGTGCAGC GCTGCGTCAG CGCCGCGCGC GATGCCGGCC TGACCCCGAG CGTCGGCCTC
GAAGACGCCT CACGCGCCGA CCGAGGCTTT CTGGCGCGAG TCGCCGACAC GGCCCAGGCC
GCGGGCGCGG TGCGCGTGCG CTATGCCGAC ACGCTCGGCA TCCTCGATCC GTTCGGCACC
TTCGATCGCA TCGGCGAACT GCGTCGCAGC ACCGATCTCG AGATCGAGAT CCACGCCCAC
AACGACCTTG GCCTGGCCAC GGCCAACACG CTGGCGGCCT TTCGCGCCGG CGCCACGCAT
GCGAGCACGA CGGTCAACGG CCTGGGCGAG CGCGCCGGCA ACGCCGCGCT CGAGGAGATC
GTGATGGCGC TGCGCCACCT GCACGGTGTC GAGTCGGGCG TCGACAGCCG TGCGCTGCCG
CACTTGTCCG CGCTGGTGGC CCAGGCCGCC GGGCGGCCGG TGGCTGCGGG CAAGTGCATC
GTCGGCGACG CGGTGTTCTG GCACGAGTCG GGCATCCACG TCGACGGCCT GCTGAAGGAC
CGCCGCAACT ACGAGAGCTT CGACCCCGCC GAGCTCGGCC GCAGCCATCG CTTCGTGCTG
GGCAAGCACT CGGGCTCGGC CGGCGTGCGC GCCGCCTGCG AGCGCCTGGG CCTGCCGATG
CCCGACGACA CCGCCGCGCC GCGCCTGCTG GCGCGCATCC GCGCCCACGC GGTCGACACC
AAACGCGAGC CCAGCGACGC CGAGTTGCGG GGCCTGTATT TCGACGTTCT GCCACGGGCC
CGACTGGCGG CCTGA
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| Protein sequence | MYAPTHLPFT LNDTTLRDGE QTAGVAFTDQ EKLAIARALD LAGVPEMEVG AAAMGEAEID
LIRAITQSGL KARTMVWARM SELDLRSAAR CGADLVHLAV PVSDLQIERK LGRDRGWVLG
MVQRCVSAAR DAGLTPSVGL EDASRADRGF LARVADTAQA AGAVRVRYAD TLGILDPFGT
FDRIGELRRS TDLEIEIHAH NDLGLATANT LAAFRAGATH ASTTVNGLGE RAGNAALEEI
VMALRHLHGV ESGVDSRALP HLSALVAQAA GRPVAAGKCI VGDAVFWHES GIHVDGLLKD
RRNYESFDPA ELGRSHRFVL GKHSGSAGVR AACERLGLPM PDDTAAPRLL ARIRAHAVDT
KREPSDAELR GLYFDVLPRA RLAA
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