| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1346 |
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| Symbol | |
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| ID | 6161371 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 1431288 |
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| End bp | 1433984 |
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| Gene Length | 2697 bp |
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| Protein Length | 898 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641664100 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001790379 |
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| Protein GI | 171058030 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGTTCGC TCCATCCCAC GCTGCCGGCG CCGACCGCGG CGACCCGCTG CGCGCCGCTC
GACGAGGCGG CCGCGCTGCG CCTGGAGATC GAGGCCCTGC GGCTGGCCAA CGCCGCGCTC
GAATCCCAGC TGCTGGCAGG CTCCGAACAG GCCGAATCGA TGTTCGTCCA ACTGGAGCGG
CAACGCAACG CGCTGCGTGA CGCCCATGGC CGCGAGCAGG CGCTCTCGGC CTTCGCGCAG
CGCGTCATGG ACACCGTCGG CGGTGTCGTC ATCGCGCTCG ATCCGCAAGG GCGGCTGCGA
CAGCGCAACC GCCACTGCCA GAACGATCTG GCGCCACTGC CCGAGGGCAG CAGCGTCGAC
CTGCTGCTGC ATCCGCAGGA TCTCGCCGCC CTCGAGGCGG CGCTGCCGCA CCTGCCGTGG
CAGGTCCATT CGGTGCTGTT CGAGACCGTG CGCCGCCAGG GCGGCTACCG GGCCGAGCAC
CAGTTCGCGA TGCGCGACGG CAGCTACCGC TACCACCTGG TCGAGGCGGC GATGCTCTAC
AGCGCCCAGA ACAAGGAGGA AGGCGCGGTG CTCAGCGGCA CCGACATCTC CGAGCTCAAG
CGGCAGGAGC AGCACCTGCG CGCCAGCGAT GCGCGCTTCA ACCAGGCCGA ACACGTGGCC
CGCGTCGGCA GCTGGGATCT CGTGCCACAC ACCGGCGCGA TGACCTGGTC GGTCGAGATG
GCCCGCATCT TCGACATCAC CGCGCAGCCG CACGCGTCGC ACGATGCAGC CGGCGCATCG
GTGTACTCGC AGGCAGACTT TCTCGCGGCC GTTCATCCCG ACGAACGGGC GCGGGTGGTC
GCGGCGCAGG CCGCTGCGAG CGCCGAGCAC CGGCCCTGCG ACATCGAGTT CCGCATCGTC
ACGTCCGGCG GCAAGATGAA ATGGGTGCAC CTGCGCTCGA CCACCTTCCA CGGCGACGAC
GGCCGGCCGC TGCGCAGCGT CGGCACCGTG CAGGACATCA CCGAACGCCG CCAGGCCGAA
GACGAGATGC GACTGGCTGC GAGCGTGTTC GACAACAGCC TCAACGCCAT CCTGATCGCC
GATGCCAACG GCCGCATCCG CAAGGTCAAC CGGGCCTTCA CCGCCATCAC CGGCTACACC
GCCGAAGAGG CGGTCGGCGA CACGCCGCGG CTGATGAAGT CCGGCCTGCA CTCGCCGGGC
TTCTATGGCG AGATGTGGGC CGAGCTGCAG GCATGCGGAA AGTGGGACGG CGAGCTGATG
AACCAGTGCA AGGACGGCCG GATCATCTCG GTGCGCGAAA GCATCGCCGC CGTGCACGAC
CCGGCCGGCG CGGTGGCCTA CTACATCGGC ATCTTCCACG ACATCACCGA ACAGAAGGCC
TCGGCGCAGC GCATCCACCA GCTGGCCTAT TACGACGTGC TGACCGGCCT GCCCAACCGG
GCGCTGCTGA TGGACCGCTG TCAGCACGAA CTGGCGCGCG CCATGCGCGA CGGCAAGCGG
CTGGCCGTGC TGTTCCTCGA CCTCGACCGC TTCAAGCACA TCAACGACAG CCTGGGCCAC
CCGGTCGGCG ACGGCCTGCT GCGTGCGGTG GCCCAGCGCC TGCAGGGCAC GCTGCGCGAC
TCCGACACCA TCGCCCGGCT CGGCGGCGAC GAGTTCATCG TGCTGCTGGA GCACGTCGAG
ACCAGCGCCG GCGTGGAGCT GGCGGCGCGG CGCATCCTGG ATGCGTTCCG CGATCCGTTC
CAGCTCGAGG AACACCGCCT GTCGGTGGGC GCGAGCGTGG GCATCAGCCT GTTCCCCGAC
CATGCGTCGG ACATCACCAG CCTGTTCAAG TACGCCGACC TCGCGCTGTA CCAGGCCAAG
GCGGCCGGCC GTGGCGACTT CCGCTTCTTC GAGCCGCGTT TCAACGACGC CGCGAAAGAC
CGCATGCGGC TGGAGCGGGA GCTGCGCCAG GCCCTCGAGC GCAACCAGCT GAGCCTGCAA
TACCAGCCGG TCTTCGCCCT GCCCGACGGA CGGCTCGCAG GCGCCGAGGC GCTGCTGCGC
TGGACGCATC CGGCGCTGGG CTCGGTCTCG CCCGCCACCT TCATCCCCAT CGCCGAGGAC
AGCGGTCTGA TCGTGCCCAT CGGCGCCTGG GTGCTCGAAC AGGCCTGTCG CCAGGCGCGC
CAGTGGCTCG ACGCCGGGCT GGATCCGGGC GTGATCGCCG TCAACCTGTC GGGCATGCAG
ATCCAGCGCA ACGACCTGGT CGACACGGTG AGCTCGGTGC TGGCGCGCAC CGGCCTGCCG
GCGTGCCACC TGGAGCTCGA GATCAGCGAG TCCTACATCA CGCGCCATGC CGAGTCGGAT
CTGCAGCGGC TCGGGCAGCT GCGCGCGCTC GGCGTCTCGA TGGCGATCGA CGACTTCGGC
ACCGGCCAGA CCTCGCTCGG CCACCTGCGG CGCCTGCCGG TCAGCAAGCT GAAGATCGAC
CGATCCTTCA TGGCCGACAT CGAGCACGAT GCGGCCGCCG CAGCCGTGAC GCGCGCCATC
ATCGGCCTGG GCCATGGCCT CGGGCTCACC GTCGTGGCCG AAGGCGTCGA GAGCGCGGCC
CAGGAAAGCG CCCTCGTCGC GCAGCACTGC GACCTGGTGC AAGGCTTCCG CTACGCCAGG
CCGCTCGACG CGCCGGTGTT CGCCGCGCTG TGTGCCCGCC CGCAGCCCCT GCGGTGA
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| Protein sequence | MGSLHPTLPA PTAATRCAPL DEAAALRLEI EALRLANAAL ESQLLAGSEQ AESMFVQLER
QRNALRDAHG REQALSAFAQ RVMDTVGGVV IALDPQGRLR QRNRHCQNDL APLPEGSSVD
LLLHPQDLAA LEAALPHLPW QVHSVLFETV RRQGGYRAEH QFAMRDGSYR YHLVEAAMLY
SAQNKEEGAV LSGTDISELK RQEQHLRASD ARFNQAEHVA RVGSWDLVPH TGAMTWSVEM
ARIFDITAQP HASHDAAGAS VYSQADFLAA VHPDERARVV AAQAAASAEH RPCDIEFRIV
TSGGKMKWVH LRSTTFHGDD GRPLRSVGTV QDITERRQAE DEMRLAASVF DNSLNAILIA
DANGRIRKVN RAFTAITGYT AEEAVGDTPR LMKSGLHSPG FYGEMWAELQ ACGKWDGELM
NQCKDGRIIS VRESIAAVHD PAGAVAYYIG IFHDITEQKA SAQRIHQLAY YDVLTGLPNR
ALLMDRCQHE LARAMRDGKR LAVLFLDLDR FKHINDSLGH PVGDGLLRAV AQRLQGTLRD
SDTIARLGGD EFIVLLEHVE TSAGVELAAR RILDAFRDPF QLEEHRLSVG ASVGISLFPD
HASDITSLFK YADLALYQAK AAGRGDFRFF EPRFNDAAKD RMRLERELRQ ALERNQLSLQ
YQPVFALPDG RLAGAEALLR WTHPALGSVS PATFIPIAED SGLIVPIGAW VLEQACRQAR
QWLDAGLDPG VIAVNLSGMQ IQRNDLVDTV SSVLARTGLP ACHLELEISE SYITRHAESD
LQRLGQLRAL GVSMAIDDFG TGQTSLGHLR RLPVSKLKID RSFMADIEHD AAAAAVTRAI
IGLGHGLGLT VVAEGVESAA QESALVAQHC DLVQGFRYAR PLDAPVFAAL CARPQPLR
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