Gene Lcho_1346 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1346 
Symbol 
ID6161371 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp1431288 
End bp1433984 
Gene Length2697 bp 
Protein Length898 aa 
Translation table11 
GC content70% 
IMG OID641664100 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 
Protein accessionYP_001790379 
Protein GI171058030 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones38 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGTTCGC TCCATCCCAC GCTGCCGGCG CCGACCGCGG CGACCCGCTG CGCGCCGCTC 
GACGAGGCGG CCGCGCTGCG CCTGGAGATC GAGGCCCTGC GGCTGGCCAA CGCCGCGCTC
GAATCCCAGC TGCTGGCAGG CTCCGAACAG GCCGAATCGA TGTTCGTCCA ACTGGAGCGG
CAACGCAACG CGCTGCGTGA CGCCCATGGC CGCGAGCAGG CGCTCTCGGC CTTCGCGCAG
CGCGTCATGG ACACCGTCGG CGGTGTCGTC ATCGCGCTCG ATCCGCAAGG GCGGCTGCGA
CAGCGCAACC GCCACTGCCA GAACGATCTG GCGCCACTGC CCGAGGGCAG CAGCGTCGAC
CTGCTGCTGC ATCCGCAGGA TCTCGCCGCC CTCGAGGCGG CGCTGCCGCA CCTGCCGTGG
CAGGTCCATT CGGTGCTGTT CGAGACCGTG CGCCGCCAGG GCGGCTACCG GGCCGAGCAC
CAGTTCGCGA TGCGCGACGG CAGCTACCGC TACCACCTGG TCGAGGCGGC GATGCTCTAC
AGCGCCCAGA ACAAGGAGGA AGGCGCGGTG CTCAGCGGCA CCGACATCTC CGAGCTCAAG
CGGCAGGAGC AGCACCTGCG CGCCAGCGAT GCGCGCTTCA ACCAGGCCGA ACACGTGGCC
CGCGTCGGCA GCTGGGATCT CGTGCCACAC ACCGGCGCGA TGACCTGGTC GGTCGAGATG
GCCCGCATCT TCGACATCAC CGCGCAGCCG CACGCGTCGC ACGATGCAGC CGGCGCATCG
GTGTACTCGC AGGCAGACTT TCTCGCGGCC GTTCATCCCG ACGAACGGGC GCGGGTGGTC
GCGGCGCAGG CCGCTGCGAG CGCCGAGCAC CGGCCCTGCG ACATCGAGTT CCGCATCGTC
ACGTCCGGCG GCAAGATGAA ATGGGTGCAC CTGCGCTCGA CCACCTTCCA CGGCGACGAC
GGCCGGCCGC TGCGCAGCGT CGGCACCGTG CAGGACATCA CCGAACGCCG CCAGGCCGAA
GACGAGATGC GACTGGCTGC GAGCGTGTTC GACAACAGCC TCAACGCCAT CCTGATCGCC
GATGCCAACG GCCGCATCCG CAAGGTCAAC CGGGCCTTCA CCGCCATCAC CGGCTACACC
GCCGAAGAGG CGGTCGGCGA CACGCCGCGG CTGATGAAGT CCGGCCTGCA CTCGCCGGGC
TTCTATGGCG AGATGTGGGC CGAGCTGCAG GCATGCGGAA AGTGGGACGG CGAGCTGATG
AACCAGTGCA AGGACGGCCG GATCATCTCG GTGCGCGAAA GCATCGCCGC CGTGCACGAC
CCGGCCGGCG CGGTGGCCTA CTACATCGGC ATCTTCCACG ACATCACCGA ACAGAAGGCC
TCGGCGCAGC GCATCCACCA GCTGGCCTAT TACGACGTGC TGACCGGCCT GCCCAACCGG
GCGCTGCTGA TGGACCGCTG TCAGCACGAA CTGGCGCGCG CCATGCGCGA CGGCAAGCGG
CTGGCCGTGC TGTTCCTCGA CCTCGACCGC TTCAAGCACA TCAACGACAG CCTGGGCCAC
CCGGTCGGCG ACGGCCTGCT GCGTGCGGTG GCCCAGCGCC TGCAGGGCAC GCTGCGCGAC
TCCGACACCA TCGCCCGGCT CGGCGGCGAC GAGTTCATCG TGCTGCTGGA GCACGTCGAG
ACCAGCGCCG GCGTGGAGCT GGCGGCGCGG CGCATCCTGG ATGCGTTCCG CGATCCGTTC
CAGCTCGAGG AACACCGCCT GTCGGTGGGC GCGAGCGTGG GCATCAGCCT GTTCCCCGAC
CATGCGTCGG ACATCACCAG CCTGTTCAAG TACGCCGACC TCGCGCTGTA CCAGGCCAAG
GCGGCCGGCC GTGGCGACTT CCGCTTCTTC GAGCCGCGTT TCAACGACGC CGCGAAAGAC
CGCATGCGGC TGGAGCGGGA GCTGCGCCAG GCCCTCGAGC GCAACCAGCT GAGCCTGCAA
TACCAGCCGG TCTTCGCCCT GCCCGACGGA CGGCTCGCAG GCGCCGAGGC GCTGCTGCGC
TGGACGCATC CGGCGCTGGG CTCGGTCTCG CCCGCCACCT TCATCCCCAT CGCCGAGGAC
AGCGGTCTGA TCGTGCCCAT CGGCGCCTGG GTGCTCGAAC AGGCCTGTCG CCAGGCGCGC
CAGTGGCTCG ACGCCGGGCT GGATCCGGGC GTGATCGCCG TCAACCTGTC GGGCATGCAG
ATCCAGCGCA ACGACCTGGT CGACACGGTG AGCTCGGTGC TGGCGCGCAC CGGCCTGCCG
GCGTGCCACC TGGAGCTCGA GATCAGCGAG TCCTACATCA CGCGCCATGC CGAGTCGGAT
CTGCAGCGGC TCGGGCAGCT GCGCGCGCTC GGCGTCTCGA TGGCGATCGA CGACTTCGGC
ACCGGCCAGA CCTCGCTCGG CCACCTGCGG CGCCTGCCGG TCAGCAAGCT GAAGATCGAC
CGATCCTTCA TGGCCGACAT CGAGCACGAT GCGGCCGCCG CAGCCGTGAC GCGCGCCATC
ATCGGCCTGG GCCATGGCCT CGGGCTCACC GTCGTGGCCG AAGGCGTCGA GAGCGCGGCC
CAGGAAAGCG CCCTCGTCGC GCAGCACTGC GACCTGGTGC AAGGCTTCCG CTACGCCAGG
CCGCTCGACG CGCCGGTGTT CGCCGCGCTG TGTGCCCGCC CGCAGCCCCT GCGGTGA
 
Protein sequence
MGSLHPTLPA PTAATRCAPL DEAAALRLEI EALRLANAAL ESQLLAGSEQ AESMFVQLER 
QRNALRDAHG REQALSAFAQ RVMDTVGGVV IALDPQGRLR QRNRHCQNDL APLPEGSSVD
LLLHPQDLAA LEAALPHLPW QVHSVLFETV RRQGGYRAEH QFAMRDGSYR YHLVEAAMLY
SAQNKEEGAV LSGTDISELK RQEQHLRASD ARFNQAEHVA RVGSWDLVPH TGAMTWSVEM
ARIFDITAQP HASHDAAGAS VYSQADFLAA VHPDERARVV AAQAAASAEH RPCDIEFRIV
TSGGKMKWVH LRSTTFHGDD GRPLRSVGTV QDITERRQAE DEMRLAASVF DNSLNAILIA
DANGRIRKVN RAFTAITGYT AEEAVGDTPR LMKSGLHSPG FYGEMWAELQ ACGKWDGELM
NQCKDGRIIS VRESIAAVHD PAGAVAYYIG IFHDITEQKA SAQRIHQLAY YDVLTGLPNR
ALLMDRCQHE LARAMRDGKR LAVLFLDLDR FKHINDSLGH PVGDGLLRAV AQRLQGTLRD
SDTIARLGGD EFIVLLEHVE TSAGVELAAR RILDAFRDPF QLEEHRLSVG ASVGISLFPD
HASDITSLFK YADLALYQAK AAGRGDFRFF EPRFNDAAKD RMRLERELRQ ALERNQLSLQ
YQPVFALPDG RLAGAEALLR WTHPALGSVS PATFIPIAED SGLIVPIGAW VLEQACRQAR
QWLDAGLDPG VIAVNLSGMQ IQRNDLVDTV SSVLARTGLP ACHLELEISE SYITRHAESD
LQRLGQLRAL GVSMAIDDFG TGQTSLGHLR RLPVSKLKID RSFMADIEHD AAAAAVTRAI
IGLGHGLGLT VVAEGVESAA QESALVAQHC DLVQGFRYAR PLDAPVFAAL CARPQPLR