Gene Lcho_1336 details

Gene Information

• Locus tag: Lcho_1336
• ID: 6162742
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 1421662
• End bp: 1422402
• Gene Length: 741 bp
• Protein Length: 246 aa
• Translation table: 11
• GC content: 72%
• IMG OID: 641664090
• Product: GntR family transcriptional regulator
• Protein accession: YP_001790369
• Protein GI: 171058020
• COG category: [K] Transcription
• COG ID: [COG1802] Transcriptional regulators

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 39
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGTCGGAAT TGAGAACGGA TGTATTGGAT CCAATCGAGC CGCCGGCCGG CCCGGATGCC 
GCCGATTCGA TCAGCGTGCT GACGGCGCTG CGGCAGTTCA TCGTCAAGGG CCGCTACGCC 
GCCGGCGAGC GGCTCACCGA GGTGGCGGTG GCGCAGGCGC TGGGGGTGTC GCGCACGCCG 
GTGCGGCTGG CGTTTCGCAC GCTGGCGCAG GAGGGGCTGC TGCAGATGGC GGGCAAGCGC 
GGCTATCTGG TGCGCGCGTT CTCGGCGGTC GACGTGGCGC ATGCGGTCGA GGTGCGCGGC 
GTGCTCGAAG GCCTGGCTGC GCGCCATCTG GCCGAACAGG GCATGAGCGC CGAGGTGCGC 
GCGCGCCTGC TCGACTGCCT GCGCGAAGGC GAGCAGGTGC TGCGTCCCGG CCACCTGAGC 
GACGACGCCA TCGGCGCCTG GAGCCGGCTC AACGCGGCCT TCCACGGCAC CCTCGTGCGG 
GCGCTGGGCA GCAGCGTGAT CGCCGACGCG ATCGCCCGCA ACGACCACCT GCCGTTCGCT 
TCGGCCGACT CGATCGTCAT CGACCGCGAC GCGCTCGGCC GCGAGCTCGA CAAGCTGCGC 
GTCGCCCAAC TGCAGCACCG GCTGGTGTTC GACGCGCTGG AGCGGCGCGA ATCGGCGCGC 
GTGGAGGCGC TGATGCGCGA GCACGCGCAG GTGGGCCTGC GCTACGGCGG CTTGCTCGGC 
AGCGCGATCC CGGCAGTTTG A 

 

Protein sequence

MSELRTDVLD PIEPPAGPDA ADSISVLTAL RQFIVKGRYA AGERLTEVAV AQALGVSRTP 
VRLAFRTLAQ EGLLQMAGKR GYLVRAFSAV DVAHAVEVRG VLEGLAARHL AEQGMSAEVR 
ARLLDCLREG EQVLRPGHLS DDAIGAWSRL NAAFHGTLVR ALGSSVIADA IARNDHLPFA 
SADSIVIDRD ALGRELDKLR VAQLQHRLVF DALERRESAR VEALMREHAQ VGLRYGGLLG 
SAIPAV