| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1333 |
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| Symbol | |
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| ID | 6162739 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 1418429 |
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| End bp | 1419460 |
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| Gene Length | 1032 bp |
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| Protein Length | 343 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641664087 |
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| Product | TRAP dicarboxylate transporter- DctP subunit |
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| Protein accession | YP_001790366 |
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| Protein GI | 171058017 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATCAC TGCTCCGCAC CGGCCTGGCG ATCGCCGCCG GCCTGGCCCT CTCGGGCGCC
GCCCTGGCAC AGGAAGTCAC GCTCAAGTTC CACCACATCT GGAACCCGCA GGCGATGGCC
TCGGTGAACG TGATCACGCC CTGGTGCGAC AAGATCGCCA AGGAATCGGC CAACAAGATG
AAGTGCCAGA TCTTCCCGGC CATGAGCATG GGCGGCACGC CGCCGCAGCT GGTCGACCAG
GTCAAGGACG GCGTGGCCGA CGTCATCATC ACGCTGCCGG GCTACACGGC CGGGCGTTTC
CCGGCGCTCG AGGTGTTCGA GCTGCCGTTC ATGACCAACT CGGCCGAAGT GGGCGCACGC
GCCGCCTGGG ACTACCTGCA GAAGTACGCG CTGAAAGAGT TCCCGGGCAC CAGGATCCTG
GCGATCTGGG TGCACGACGA GGGCTTCATC CACACCCGCG ACAAGCCGGT CAAGACGATG
GCCGACTTCA AGGGCCTGAA GATGCGCGCG CCCACGCGCC AGACCAACAA GCTGCTGTCG
ACGCTGGGCG CCACCCCGGT GGGCATGCCG CTGCCGGCGA TCGTCGACTC GGTCAGCAAG
GGCACGATCG ACGGCTTCCT GCTGCCGTGG GAGGTGATGC CCTCGCTCAA GCTGCACGAG
ATGGTCAAGT ACCACTCCGA GACCGACCCG AGCCGCGCGG CGCTCTACAG CGCGGTGTTC
GTGTTCGCGA TGAACCAGGC CAAGTACGAC GCCCTGAGCC CCGAGCTCAA GGCGGTGATC
GACGCCAACA GCGGCGCCGC CTACTCGCAG GCGATCGGCA AGATCTGGGA CGGCAGCCAG
GCCGCCGGCC GCAAGGCGGC GCAGGAGCGT GGCAACACCT TCACGATGAT CCCCGCGGCC
GAGCTCGACA ACTGGATCAA GGCCTCGGCG CCGCTGTACG AAAGCTTCAC GTCCGACATG
GACAAGAAGG GCATGCCCGG CAAGCAGATG CTGCAGGACG CGCGCGACCT GCTGGTCAAG
TACCGCAAGT GA
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| Protein sequence | MKSLLRTGLA IAAGLALSGA ALAQEVTLKF HHIWNPQAMA SVNVITPWCD KIAKESANKM
KCQIFPAMSM GGTPPQLVDQ VKDGVADVII TLPGYTAGRF PALEVFELPF MTNSAEVGAR
AAWDYLQKYA LKEFPGTRIL AIWVHDEGFI HTRDKPVKTM ADFKGLKMRA PTRQTNKLLS
TLGATPVGMP LPAIVDSVSK GTIDGFLLPW EVMPSLKLHE MVKYHSETDP SRAALYSAVF
VFAMNQAKYD ALSPELKAVI DANSGAAYSQ AIGKIWDGSQ AAGRKAAQER GNTFTMIPAA
ELDNWIKASA PLYESFTSDM DKKGMPGKQM LQDARDLLVK YRK
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