Gene Lcho_1330 details

Gene Information

• Locus tag: Lcho_1330
• ID: 6163024
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: -
• Start bp: 1414534
• End bp: 1416444
• Gene Length: 1911 bp
• Protein Length: 636 aa
• Translation table: 11
• GC content: 74%
• IMG OID: 641664084
• Product: peptidase S8/S53 subtilisin kexin sedolisin
• Protein accession: YP_001790363
• Protein GI: 171058014
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG1404] Subtilisin-like serine proteases

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 33
• Fosmid unclonability p-value: 0.382458
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGATCAACC GTCCCCTTGC CCTCGTGGCG GCCGTCGCCG CCACGGCGGC ACTGCTGCCG 
GGCTGCCAGC CCCAGCCCAC CGTGACGCCG CCGGCGGCTT CGGCCCCGAC GGCAGCGCGT 
GCGCCGCAGC CCGCCGGCGT GCCGGTGGTG GCGATGGCAC CCGTGGACGT GCAGCGCCTG 
CTGGAGAAAC GCATCACGCC GGCCTTCGTG CCCGGCCAGG TGGTGGTCAA GCTGAAAGCC 
GGCGTGCGCG CCGCGCCGAT GGCCGCGCGC GAGATGGCAC GGCTGCAGAT CGAGCCGGCC 
CAGGCGCTGA CCTCGGGCGG CGAGCGCATC TACCGCGTCA CGCCCACCGC AGCGCGCTCG 
ATGGGCGCAG GCGCCGTCAC CGACCGCACG CTCGAACTGG TGCAGCAGAT GGCGGCGCGG 
CCCGAGGTCG CCTACGCGCA GCCCAACTAC CTGTTCCAGA TCAGCGCGGT GCCCAACGAC 
CCGGGCTACG CCCAGCAGTG GCACTACTTC GACAACGGCA GCGGCGCCGG CCGCTCGCCC 
GGCGGCATCA ACCTGCCGCA GGTCTGGGAC AGCAACAAGG GCTCGGCCGC GGTGGTGGTG 
GCGGTGATCG ACACCGGCAT CCTGAGCGCG CACCCCGACA TCACCGGCTC GCCCAATCGG 
GTGGCCGGTT TCGACATGAT CGGCGATCCC TTCATCGCCA ACGACGGCGA CGGGCGCGAC 
AGCGACCCGA CCGACCCCGG TGACGCCAGC GCCGCCGGCG AATGCGGTGC CGGCAGCACC 
GCGCAACCCG ACAGCTGGCA CGGCACCCAC GTGGCCGGCA CGGTCGGCGT GGGCCACACC 
GACAACGGCG TCGGCCTGGC CGGCGTCAAC TGGAACGTCA AGCTGCAGGC GGTGCGCGTG 
CTCGGCAAGT GCGGCGGCAC GATGGTCGAC ATCAACGACG GCATCCGCTG GGCCGCCGGC 
CTGCCGGTGC CGGGCGTGCC GCTCAACCCG ACGCCGGCGC GGGTGATCAA CCTGAGCCTG 
GGCGGCGGCA CGCCGTGTTC GGCCTCGCCG GCCACGCAGT CGGCCATCAA CGACGCGCTG 
GCACGCGGCG TGACGGTGGT GGTGGCCGCG GGCAACGAGG CCTCGGACGC GGCCGGCTTC 
GTGCCCGCCA GCTGCAACGG CGTGATCACG GTGGCGGCGA GCGATTTCCG CGGCCGGCTG 
GTGACGCGTT ATTCGAACTA CGGTGCGCGC ATCGACATCC TGGCGCCCGG CGGCGACACC 
GCCCGCGACG ACAACGGCGA CGGCCAGAAC GACGGCGTGC TGTCGATGGT GCAAGGCGGC 
TACGCGCGCT ACAACGGCAC CTCGATGGCC AGCCCGCACG TGGCCGGCGT GGCCGCGCTG 
ATGCTGGCCA ACCAGCCCGC ACTGACCCCG GTGCAGGTGC GTGACGCGCT GAAAGCCTCG 
GCCCTGCCGC GCAGCGCCAC CGACTGCCCG CAACCCTGCG GTGCCGGCCT GCTCAACGCC 
CGCGCGGCCC TCGGACCGGG CGCGCCGCCC CCGCCGCCCC CACCGACGGA GGTGGTGCTG 
GCGCCCCTCG CCATGAACGT CGCCATCGGC CAGAACGCGG CGCTGCTGGT CACGGTCACG 
GCCGGCAGCG CGCCGCTGGC GGGCAAGAAC GTGACCTTGA GCTCGAACAA CCCCGCCGTG 
GTCAGCGTGA TGCCGGCCGA AGGCACGACC GATGCCAACG GCCGCCTGAC CGCCACCGTC 
AGCGCGCTGG CACAGGGCAA CGCCACCATC ACCGCCAGCA CCGATGGCAA CCAGGCCAGC 
ACGGCCATCA CCGTGCCGGC GCGCAGCGCG GCCTTGCCGC AGCCCCTGGT GCTGGCGCTT 
GGCCTGCTGG CCGGGGCCGT GCTGGCATGG CGACGCCGAA CCGCTGGCTG A 

 

Protein sequence

MINRPLALVA AVAATAALLP GCQPQPTVTP PAASAPTAAR APQPAGVPVV AMAPVDVQRL 
LEKRITPAFV PGQVVVKLKA GVRAAPMAAR EMARLQIEPA QALTSGGERI YRVTPTAARS 
MGAGAVTDRT LELVQQMAAR PEVAYAQPNY LFQISAVPND PGYAQQWHYF DNGSGAGRSP 
GGINLPQVWD SNKGSAAVVV AVIDTGILSA HPDITGSPNR VAGFDMIGDP FIANDGDGRD 
SDPTDPGDAS AAGECGAGST AQPDSWHGTH VAGTVGVGHT DNGVGLAGVN WNVKLQAVRV 
LGKCGGTMVD INDGIRWAAG LPVPGVPLNP TPARVINLSL GGGTPCSASP ATQSAINDAL 
ARGVTVVVAA GNEASDAAGF VPASCNGVIT VAASDFRGRL VTRYSNYGAR IDILAPGGDT 
ARDDNGDGQN DGVLSMVQGG YARYNGTSMA SPHVAGVAAL MLANQPALTP VQVRDALKAS 
ALPRSATDCP QPCGAGLLNA RAALGPGAPP PPPPPTEVVL APLAMNVAIG QNAALLVTVT 
AGSAPLAGKN VTLSSNNPAV VSVMPAEGTT DANGRLTATV SALAQGNATI TASTDGNQAS 
TAITVPARSA ALPQPLVLAL GLLAGAVLAW RRRTAG