Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_1309 |
Symbol | |
ID | 6163680 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 1394095 |
End bp | 1396569 |
Gene Length | 2475 bp |
Protein Length | 824 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 641664064 |
Product | EcoEI R domain-containing protein |
Protein accession | YP_001790343 |
Protein GI | 171057994 |
COG category | [V] Defense mechanisms |
COG ID | [COG4096] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 36 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACGACA AGAGCCGCCT CAGCGAGAGC GACATCTGCG ACAAGTTCAT CCGCCCAGCC ATCGAGCGCG CAGGCTGGAA CGGCATGGAC CAGATCTACC GCGAGTACCC GCTGCGCGCC GGCCGCGTGG TGGTGCGCGG CCGCAAGGCC CGCCGCGACG CCTCGACGGT GCTGCGCGCC GACTACGCGC TGTTCTACAA GCTCAACATC CCGCTGGCAG TGGTCGAGGC CAAGGACGCC AGCCACGCAG TCGGCGCCGG CATGGCGCAG GCTATCAACT ACGCCGCTTT GCTCGACGTG CCCTTCAGCT TTGCCAGCAA CGGCGACGGC TTCATCTTCC GCGATGCCAC GCTGGCCGAT GGGGTGCTGG AGCGCTACCT GACGCTCGAT CAGTTCCCGT CGCCGGCCGA ACTGTGGGCC AAGTACTGCG CCTGGAAAGG CTGGACAGCC GAGGTGCGCA AGGTCGCCGA GTTCGACTAC GCGCCAGCCA AGACACCGCG CTACTACCAG CTCAACGCCA TCAACCGCAC GGTCGAGGCG ATTGCACAAG GGCGCCAGCG CGCGCTGCTG GTCATGGCCA CCGGCACCGG CAAGACCTAC ACCGCCTTCC AGATCATCTG GCGGCTGTGG AAGAGCTGCG CCAAGAAACG CATCCTGTTC CTGGCCGACC GCAACATCCT GATCGACCAG ACCATGGTCA ACGATTTCCG CCCCTTCAAG GGCGCGATGG CCAAGCTGAG CCCCAATGCC AAGGGCGTCG AACGCGTCGA TGCGCAGGGC CGGGTGGGTG TCGAGGACGT GACGCTGGCC GTCAACAGAA CCACCAAGCA GGTCGACACG AGCTACGAGA TCTACCTGTC GCTCTACCAG GCGGTCACCG GCACCAGCGA CGAGAGCAAC ATCTACAAGC AGTTCTCGCC CGACTTCTTC GACCTCATCA TCGTCGACGA ATGCCACCGC GGCAGCGCCG CCGAAGACTC GTCGTGGCGC GAGATCCTCA GCTACTTCAG CAGCGCCACC CAGGTCGGCC TGACCGCCAC GCCCAAGGAG ACGCAGGACG TTTCCAACAG CGACTACTTC GGCGAGCCGA TCTACACCTA CAGCCTCAAG CAGGGCATCG AGGACGGCTA CCTCGCGCCC TACAAGGTGG TGCGCATCGA TCTCGACCGC GACACCTTCG GCTGGCGCCC GACCGAGGGC ATGACCGACA AGCTCGGCAA CCTGATCGAA GACCGCGTCT ACACCGGCGC CGACATGAAC CGCCGCCTGG TGCTGGAGCG CCGCGACGAG GTGGTGGCCG CCAAGATCAC CGAGTATCTG AAGGCGACCG ATCGCGAAGC CAAGACCATC GTCTTCTGCG AGGACATCGA CCACGCCGCG CGCATGCGCC AGGCCCTGAG CAACGCCAAT GCCGACATCT GCCAGACCCA GCCGCGCTAC GTGGTGCAGA TCACCGGCGA CAACCCCGAA GGCAAACGCG AACTCGACAA CTTCATCGAC CCGGAGAAGA CCTACCCGGT GATTGCCACC ACGTCCAAGC TGATGAGCAC CGGCGTCGAT GCGCAGACCT GCAAGCTCAT CGTGCTGGAC CAGAACATCA AGTCGATGAC GCTGTTCAAG CAGATCATCG GCCGCGGCAC CCGACTGCGC GAAGACCTGG GCAAGACCTG GTTCACCATC CTCGACTTCA AGCGCGCCAC CGAGCTGTTC GCCGACAAGG ATTTCGACGG CGAGCCGGTG CAGGTCTACG AGCCCAAGGG TGACGAGCCT GTCGAACCGC CCGAGGTGGC GGATCCGGGC GATCCGGCGG GACAGCCCGA TGCCGGTGAA GAAGGTGCAG GCGATCCGCC AACCGGAACC GATCCGCCGC TCGGCCCCTT CGGTGGCGGC GACGATGCGC CACCTCGCAA GTACGTCATC GGCGGCCAGG TCAACGTGCA GGTGGCTCGC GAGCGGGTGC AATACCTCAA CGCCGACGGC AAGCTCGTCA CCGAGAGCCT GCGCGACTAC ACCCGCATCA ACCTCGCCAA GCGTTTCGAC TCGCTCGACC AGTTCCTGCA GACCTGGAAC AGCGCCGAGC GCAAGGCCGT GCTGATCGAT GAACTGGAGC GCCAGGGCGT GTTCCTCGAC GCGCTGGCCG ACGAGGTGGG CAAGGACCTC GACCCCTTCG ATCTGCTGCT GCACGTCGCC TACGATCAGC CGCCGCTGAC ACGCCGCGAG CGCGCCCGCC GCGTCAAGCA GCGCAACGTC TTCACCGACT ACGGGCCGAT GGCGCGCAAG GTGATCGACG CGCTGCTCGA CAAGTACGCC GACGAAGGCA TCGCCACCAT CGAGGGCCAG TCGGTCTTCA ACGTGCAGCC CTTCAACCAG TTCGGCAGCG CCACTGAAAT CATCAAGAGC TTCGGCGGCC GGCCCCAATA CCTGCAAGCC CTGAACATCC TGGAGCGCGA GCTTTACGCG CCCGCTCATT CCTGA
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Protein sequence | MNDKSRLSES DICDKFIRPA IERAGWNGMD QIYREYPLRA GRVVVRGRKA RRDASTVLRA DYALFYKLNI PLAVVEAKDA SHAVGAGMAQ AINYAALLDV PFSFASNGDG FIFRDATLAD GVLERYLTLD QFPSPAELWA KYCAWKGWTA EVRKVAEFDY APAKTPRYYQ LNAINRTVEA IAQGRQRALL VMATGTGKTY TAFQIIWRLW KSCAKKRILF LADRNILIDQ TMVNDFRPFK GAMAKLSPNA KGVERVDAQG RVGVEDVTLA VNRTTKQVDT SYEIYLSLYQ AVTGTSDESN IYKQFSPDFF DLIIVDECHR GSAAEDSSWR EILSYFSSAT QVGLTATPKE TQDVSNSDYF GEPIYTYSLK QGIEDGYLAP YKVVRIDLDR DTFGWRPTEG MTDKLGNLIE DRVYTGADMN RRLVLERRDE VVAAKITEYL KATDREAKTI VFCEDIDHAA RMRQALSNAN ADICQTQPRY VVQITGDNPE GKRELDNFID PEKTYPVIAT TSKLMSTGVD AQTCKLIVLD QNIKSMTLFK QIIGRGTRLR EDLGKTWFTI LDFKRATELF ADKDFDGEPV QVYEPKGDEP VEPPEVADPG DPAGQPDAGE EGAGDPPTGT DPPLGPFGGG DDAPPRKYVI GGQVNVQVAR ERVQYLNADG KLVTESLRDY TRINLAKRFD SLDQFLQTWN SAERKAVLID ELERQGVFLD ALADEVGKDL DPFDLLLHVA YDQPPLTRRE RARRVKQRNV FTDYGPMARK VIDALLDKYA DEGIATIEGQ SVFNVQPFNQ FGSATEIIKS FGGRPQYLQA LNILERELYA PAHS
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