| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1309 |
|---|
| Symbol | |
|---|
| ID | 6163680 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 1394095 |
|---|
| End bp | 1396569 |
|---|
| Gene Length | 2475 bp |
|---|
| Protein Length | 824 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641664064 |
|---|
| Product | EcoEI R domain-containing protein |
|---|
| Protein accession | YP_001790343 |
|---|
| Protein GI | 171057994 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG4096] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGACA AGAGCCGCCT CAGCGAGAGC GACATCTGCG ACAAGTTCAT CCGCCCAGCC
ATCGAGCGCG CAGGCTGGAA CGGCATGGAC CAGATCTACC GCGAGTACCC GCTGCGCGCC
GGCCGCGTGG TGGTGCGCGG CCGCAAGGCC CGCCGCGACG CCTCGACGGT GCTGCGCGCC
GACTACGCGC TGTTCTACAA GCTCAACATC CCGCTGGCAG TGGTCGAGGC CAAGGACGCC
AGCCACGCAG TCGGCGCCGG CATGGCGCAG GCTATCAACT ACGCCGCTTT GCTCGACGTG
CCCTTCAGCT TTGCCAGCAA CGGCGACGGC TTCATCTTCC GCGATGCCAC GCTGGCCGAT
GGGGTGCTGG AGCGCTACCT GACGCTCGAT CAGTTCCCGT CGCCGGCCGA ACTGTGGGCC
AAGTACTGCG CCTGGAAAGG CTGGACAGCC GAGGTGCGCA AGGTCGCCGA GTTCGACTAC
GCGCCAGCCA AGACACCGCG CTACTACCAG CTCAACGCCA TCAACCGCAC GGTCGAGGCG
ATTGCACAAG GGCGCCAGCG CGCGCTGCTG GTCATGGCCA CCGGCACCGG CAAGACCTAC
ACCGCCTTCC AGATCATCTG GCGGCTGTGG AAGAGCTGCG CCAAGAAACG CATCCTGTTC
CTGGCCGACC GCAACATCCT GATCGACCAG ACCATGGTCA ACGATTTCCG CCCCTTCAAG
GGCGCGATGG CCAAGCTGAG CCCCAATGCC AAGGGCGTCG AACGCGTCGA TGCGCAGGGC
CGGGTGGGTG TCGAGGACGT GACGCTGGCC GTCAACAGAA CCACCAAGCA GGTCGACACG
AGCTACGAGA TCTACCTGTC GCTCTACCAG GCGGTCACCG GCACCAGCGA CGAGAGCAAC
ATCTACAAGC AGTTCTCGCC CGACTTCTTC GACCTCATCA TCGTCGACGA ATGCCACCGC
GGCAGCGCCG CCGAAGACTC GTCGTGGCGC GAGATCCTCA GCTACTTCAG CAGCGCCACC
CAGGTCGGCC TGACCGCCAC GCCCAAGGAG ACGCAGGACG TTTCCAACAG CGACTACTTC
GGCGAGCCGA TCTACACCTA CAGCCTCAAG CAGGGCATCG AGGACGGCTA CCTCGCGCCC
TACAAGGTGG TGCGCATCGA TCTCGACCGC GACACCTTCG GCTGGCGCCC GACCGAGGGC
ATGACCGACA AGCTCGGCAA CCTGATCGAA GACCGCGTCT ACACCGGCGC CGACATGAAC
CGCCGCCTGG TGCTGGAGCG CCGCGACGAG GTGGTGGCCG CCAAGATCAC CGAGTATCTG
AAGGCGACCG ATCGCGAAGC CAAGACCATC GTCTTCTGCG AGGACATCGA CCACGCCGCG
CGCATGCGCC AGGCCCTGAG CAACGCCAAT GCCGACATCT GCCAGACCCA GCCGCGCTAC
GTGGTGCAGA TCACCGGCGA CAACCCCGAA GGCAAACGCG AACTCGACAA CTTCATCGAC
CCGGAGAAGA CCTACCCGGT GATTGCCACC ACGTCCAAGC TGATGAGCAC CGGCGTCGAT
GCGCAGACCT GCAAGCTCAT CGTGCTGGAC CAGAACATCA AGTCGATGAC GCTGTTCAAG
CAGATCATCG GCCGCGGCAC CCGACTGCGC GAAGACCTGG GCAAGACCTG GTTCACCATC
CTCGACTTCA AGCGCGCCAC CGAGCTGTTC GCCGACAAGG ATTTCGACGG CGAGCCGGTG
CAGGTCTACG AGCCCAAGGG TGACGAGCCT GTCGAACCGC CCGAGGTGGC GGATCCGGGC
GATCCGGCGG GACAGCCCGA TGCCGGTGAA GAAGGTGCAG GCGATCCGCC AACCGGAACC
GATCCGCCGC TCGGCCCCTT CGGTGGCGGC GACGATGCGC CACCTCGCAA GTACGTCATC
GGCGGCCAGG TCAACGTGCA GGTGGCTCGC GAGCGGGTGC AATACCTCAA CGCCGACGGC
AAGCTCGTCA CCGAGAGCCT GCGCGACTAC ACCCGCATCA ACCTCGCCAA GCGTTTCGAC
TCGCTCGACC AGTTCCTGCA GACCTGGAAC AGCGCCGAGC GCAAGGCCGT GCTGATCGAT
GAACTGGAGC GCCAGGGCGT GTTCCTCGAC GCGCTGGCCG ACGAGGTGGG CAAGGACCTC
GACCCCTTCG ATCTGCTGCT GCACGTCGCC TACGATCAGC CGCCGCTGAC ACGCCGCGAG
CGCGCCCGCC GCGTCAAGCA GCGCAACGTC TTCACCGACT ACGGGCCGAT GGCGCGCAAG
GTGATCGACG CGCTGCTCGA CAAGTACGCC GACGAAGGCA TCGCCACCAT CGAGGGCCAG
TCGGTCTTCA ACGTGCAGCC CTTCAACCAG TTCGGCAGCG CCACTGAAAT CATCAAGAGC
TTCGGCGGCC GGCCCCAATA CCTGCAAGCC CTGAACATCC TGGAGCGCGA GCTTTACGCG
CCCGCTCATT CCTGA
|
|---|
| Protein sequence | MNDKSRLSES DICDKFIRPA IERAGWNGMD QIYREYPLRA GRVVVRGRKA RRDASTVLRA
DYALFYKLNI PLAVVEAKDA SHAVGAGMAQ AINYAALLDV PFSFASNGDG FIFRDATLAD
GVLERYLTLD QFPSPAELWA KYCAWKGWTA EVRKVAEFDY APAKTPRYYQ LNAINRTVEA
IAQGRQRALL VMATGTGKTY TAFQIIWRLW KSCAKKRILF LADRNILIDQ TMVNDFRPFK
GAMAKLSPNA KGVERVDAQG RVGVEDVTLA VNRTTKQVDT SYEIYLSLYQ AVTGTSDESN
IYKQFSPDFF DLIIVDECHR GSAAEDSSWR EILSYFSSAT QVGLTATPKE TQDVSNSDYF
GEPIYTYSLK QGIEDGYLAP YKVVRIDLDR DTFGWRPTEG MTDKLGNLIE DRVYTGADMN
RRLVLERRDE VVAAKITEYL KATDREAKTI VFCEDIDHAA RMRQALSNAN ADICQTQPRY
VVQITGDNPE GKRELDNFID PEKTYPVIAT TSKLMSTGVD AQTCKLIVLD QNIKSMTLFK
QIIGRGTRLR EDLGKTWFTI LDFKRATELF ADKDFDGEPV QVYEPKGDEP VEPPEVADPG
DPAGQPDAGE EGAGDPPTGT DPPLGPFGGG DDAPPRKYVI GGQVNVQVAR ERVQYLNADG
KLVTESLRDY TRINLAKRFD SLDQFLQTWN SAERKAVLID ELERQGVFLD ALADEVGKDL
DPFDLLLHVA YDQPPLTRRE RARRVKQRNV FTDYGPMARK VIDALLDKYA DEGIATIEGQ
SVFNVQPFNQ FGSATEIIKS FGGRPQYLQA LNILERELYA PAHS
|
|---|
| |