| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1295 |
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| Symbol | |
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| ID | 6160907 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 1380245 |
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| End bp | 1381951 |
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| Gene Length | 1707 bp |
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| Protein Length | 568 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641664049 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001790329 |
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| Protein GI | 171057980 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.00252669 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCATCGA CCCCAACCAC GCAGGCGCCT GATCTCGGCG ACTTCTTCAA GTCCGTCATC
GATTCGACCA CCGACGCGGT CATCACCAAG GACCTGCACG GCATCGTCAC CAGCTGGAAC
CGCGCGGCCG AATCGATCTT CGGCTACAGC GCCGCCGAGA TGATCGGCCA GCCGATGGTG
AAGGTCTTCC CGGCCGACCG GCTGCAGGAG GAGCCGATGA TCCTGGCGCG CATCGGCCGC
GGCGAGCGGG TCGACCACTT CGAGACCGTG CGGGTGCGCA AGGACGGCAG CCTGGTCAAC
GTCTCGGCGA CCATCTCGCC GCTGCACGAC AGCGAGGGCC GCATCGTCGG CGCCTCCAAG
ATCGCGCGCG ACATCACCGA GCGCATCCAG GCCGAGCGCA CGATCTGGCT GCAGGCCAAT
CACGACACGC TGACCTCGCT GCCGAACCGC CGCCATTTCC AGGAGCGGCT GACCCTGGAG
CTGGCGCGGG CCCGGCGCAT GCAGCGCCAC CTGGCGGTGA TGTTCATCGA CCTGGATCGG
TTCAAGGACG TCAACGACAC GCTGGGCCAC CAGGCCGGCG ACGACCTGCT GGTGCAGGCG
GCGCAGCGCA TCCGCGCGGC GGTGCGCGAG ATCGACACGG TGGCCCGCAT GGGCGGCGAC
GAGTTCACCA TCCTGCTGCC CGATCTGGTG GCCGGCGACG AGGTCGAGCC GATCGCGCGG
CGCGTCAACC TGTGCCTGTT CAAGCCCTTC ACGCTGGACG GCCAGACGTC GGTGCAGATC
TCCGGCAGCA TCGGCGTGGC GCTGTTCCCG CAGGACGGCG AGACCGCCGA CGTGCTGCTG
ATGCACGCCG ATCAGGCGAT GTACGAATCC AAGCGGCTCG GCCGCAACCA GGCCCGGCAT
TTCGCGAAGG CGCTGGAATC GAACATCCGC GACCGCATGC GCCTGACCCA CGACCTGCGT
CACGCCGTCG AACGCGGCGA GCTGTCGCTG AGCTTGCAGC CGCTGGTCGA CCTGCGTGAC
GGCTCGGTGC GCCAGCACGA AGCGCTGCTG CGCTGGGTGC ATCCGGTGTT CGGCGCCATC
AGCCCGTCGG TCTTCATGCC GCTGGCCGAA GAGACCGGCG TCATCCGCGA CATCGGCGAC
TGGGCGTTCG ACACCGTCGC GCGCCAGGCG GCCGACCGCA GCCGCGCGGG CAGCCCGGTG
ATCCCGGTCA GCCTCGACGT GTCGCCGGTG CAGCTGCACG CGGGCCTCGG TTACTTCAGG
CGCTGGCTCG ACGAATGGGC GCGGCTCGAA CTGCCCGCCG ATGCGCTGGC GCTCGAAATC
GCCGAAAGCG CGCTGGCCGA GCCGTCCGAC GGCGTCGGCG AACTGCTGCA GCAGCTCGGT
GCCGCGGGTG TGCCGCTGAT CGTGGACCAC TTCGGCGCCG GCGCGTCCTG CCTGTCGCGG
CTGAACCGCC TCGACATCGG CATGCTCAAG CTCGACCCGA GCCTGCTGCG CGACCTGGGC
GTCGACGGCA AGAGCACCCG GCTGTGCGAA GCGATGGTGC AGATGGCGCA CACGCTCGGC
CTGCAGGTGG TGGCCCAGGG TGTCGAGACA CCGGCGCAGC GCGCGCTGCT GGCGCGCATG
GGCTGCGACT TCGGCCAGGG CCATCTGTTC GCCGCGATCG AGCCGGGCCC CGGCGCCGAA
GTGCCTGCGT GGCCGGCCGC GGCCTGA
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| Protein sequence | MASTPTTQAP DLGDFFKSVI DSTTDAVITK DLHGIVTSWN RAAESIFGYS AAEMIGQPMV
KVFPADRLQE EPMILARIGR GERVDHFETV RVRKDGSLVN VSATISPLHD SEGRIVGASK
IARDITERIQ AERTIWLQAN HDTLTSLPNR RHFQERLTLE LARARRMQRH LAVMFIDLDR
FKDVNDTLGH QAGDDLLVQA AQRIRAAVRE IDTVARMGGD EFTILLPDLV AGDEVEPIAR
RVNLCLFKPF TLDGQTSVQI SGSIGVALFP QDGETADVLL MHADQAMYES KRLGRNQARH
FAKALESNIR DRMRLTHDLR HAVERGELSL SLQPLVDLRD GSVRQHEALL RWVHPVFGAI
SPSVFMPLAE ETGVIRDIGD WAFDTVARQA ADRSRAGSPV IPVSLDVSPV QLHAGLGYFR
RWLDEWARLE LPADALALEI AESALAEPSD GVGELLQQLG AAGVPLIVDH FGAGASCLSR
LNRLDIGMLK LDPSLLRDLG VDGKSTRLCE AMVQMAHTLG LQVVAQGVET PAQRALLARM
GCDFGQGHLF AAIEPGPGAE VPAWPAAA
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