| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1286 |
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| Symbol | |
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| ID | 6160385 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 1371219 |
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| End bp | 1372466 |
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| Gene Length | 1248 bp |
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| Protein Length | 415 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 641664040 |
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| Product | Bcr/CflA subfamily drug resistance transporter |
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| Protein accession | YP_001790320 |
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| Protein GI | 171057971 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | [TIGR00710] drug resistance transporter, Bcr/CflA subfamily
[TIGR00880] Multidrug resistance protein |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.00000624071 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCCGTTT CTTCCCCACC CGCGGCAGCG CCCGGCGAGC GCGCCGCGCT GCTCTCGCCC
CTGCTGGCCG CCATCACGCT GGCGCTGCTG TTCGGCCTGC AGCCGGCCAC CACCGATCTA
TACCTGCCCG GCCTGCCGCT GCTGACACGC GAGTTCGCGA CCAGCGTCTC GACCGCGCAG
CTGACGATGT CGGCGCTGAT CCTCGCCTTC GGTTTCGGCC AGCTGGTGTG GGGCCCGGTG
GCCGACCGGG TGGGCCGCCG GCCGGTGCTG CTGGCCGGGC TGGCGCTCTA CACGCTGGCT
GCGGCGGCCG GCATGCTGGC GCAGTCCATG ACCCTGCTGA TCGCCGCCCG CGTGCTGCAG
GGCGCGGCGA TGGCCGCGGC GGTGGTGGTC GGCCGCGCGA TGGTGCGCGA TCTGTATCCG
CCGCACGAAG GCGCCCACGT GATGTCGCTG GGCATGAGCG GGCTGGGCAT CATCGCCATC
AGCAGCCCGC TGCTGGGTGG CTGGGTGACG GCGGCCTGGG GCTGGCGCGC GCCATTCGGG
GTGGTCTGCG CGCTGTCGCT GCTGATCTGG ATCTGGGTCT GGCGCGTGGT GCCCGAGACC
ATCCGCCAGC GCAACCCGCA GGCCCTGCAG CCGGCGCTGC TGGGGGCGGC CTGGCGGCGC
ATCCTGGCGC ACCCGGGGTT CCGTGCCTGG GCCGGGCTGA CCGCCGGCAC CTACGCCGGG
CTGTTCATGT TCCTGGCCGG CTCGTCGTTC GTCTACATGA GCGTGCTGGG CCTGAGCGCG
ACCGCCTACG GGCTGGCGCT GAGCACCAGC TCGGTCGCCT ACCTGATCGG CACGGTGTTC
TGCCGGCGCT GGCTGGTGCG CCACGGCAGC ATCGGCGCGG TCAAGCGCGC GGCGCCGTTC
ACGCTGATCG GCGGGCTGGG CATGGCCGCG CTGGCGCTGG CGGGCGTGCA GACGGTCTGG
GCGGTGCTGC TGCCGCAGCT CGCCTATGCC TTCGCGCACG GCGTGCACCA GAGCTGCGGC
CAGGCCGGCG CGGTGTCGTT CTTTCCGCGC GAGGCGGGCA CGGCGTCGGC GCTGGCCGGC
TTCGTGCTGG CGGGCGTGGC GTTCGGCGTC GGCAACCTGC TCGGCCAGCT GATGGACGAC
AGCGCCCTGC CGCTGGCACT CGGCGTGGCC GCGGCCTCGA TCGCCACCGC GCTGATCGCC
TGGACCCGCG TGCAGAGCCA CGGCCTGGCC GCCCCGGCGC ATGCCTGA
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| Protein sequence | MSVSSPPAAA PGERAALLSP LLAAITLALL FGLQPATTDL YLPGLPLLTR EFATSVSTAQ
LTMSALILAF GFGQLVWGPV ADRVGRRPVL LAGLALYTLA AAAGMLAQSM TLLIAARVLQ
GAAMAAAVVV GRAMVRDLYP PHEGAHVMSL GMSGLGIIAI SSPLLGGWVT AAWGWRAPFG
VVCALSLLIW IWVWRVVPET IRQRNPQALQ PALLGAAWRR ILAHPGFRAW AGLTAGTYAG
LFMFLAGSSF VYMSVLGLSA TAYGLALSTS SVAYLIGTVF CRRWLVRHGS IGAVKRAAPF
TLIGGLGMAA LALAGVQTVW AVLLPQLAYA FAHGVHQSCG QAGAVSFFPR EAGTASALAG
FVLAGVAFGV GNLLGQLMDD SALPLALGVA AASIATALIA WTRVQSHGLA APAHA
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