| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1265 |
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| Symbol | |
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| ID | 6162882 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 1350588 |
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| End bp | 1352033 |
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| Gene Length | 1446 bp |
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| Protein Length | 481 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641664019 |
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| Product | outer membrane efflux protein |
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| Protein accession | YP_001790299 |
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| Protein GI | 171057950 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.000567174 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCCATTG AGAAGCTGCC GATGCCCGCG ATCCCGCCCC GCGACCGATC GCGACCGCCG
TTGCTGGGCC TGGTCGCGCT GACCCTGGCG CTCGGCGGCT GCGCCGGCAT CGGCTCGGCC
GACGGCTTTT CAGCGGTCTC CGCCACCGCA TCCGAACAGC TCGGCAAGGA CCTGCGATGG
GCCCGCTCCG AGGCCGATCT CGACGCCATC GAGCGTCGCG TCGCCGAGCT GCTGCGCGCG
CCGCTGACGG CCGATTCGGC GGTGCAGATC GCGCTGCTCA ACAACCGCGG TCTGCAGGCG
AGCTTCCAGG CGCTGGGCAT CGCCGACGCC GATCGGGTGC AGGCCAGCCG GCTGCCCAAC
CCCGGCTTCA GCTTCGGCCG CTCGCGCCGT GGCGACGAGC GCGAGATCGA GCGGTCGCTG
TCGATCGACC TCGGCCACCT GCTGCTGATG CCGCTGGCGC GTCAGGCCGA ATCGCGCCGC
CACGCCGCCG TGCAGCGCAG CGTGTCGATG CAGATGCTCG GCCTGGCCGC CAGCACCCGC
AAGGCGTACT ACCACGCCAT CGCCGCCGAC CAGACCTGGC GCTACATGCA GCAGGTGCGC
GCCAGCGCCG AGGCCGGTGC CGAACTGGCG AGCCGGCTGG CCCGGGTCGG CAACTGGACC
GCGCTGCAGC AGGCGCGTGA ACAGGGTTTC TACGCGACGG CGGCGCTCAA CGAGGCGCGC
GCCCAGCAGG GCCGCATCGC CAGCCGCGAA CAGCTGATCC GCCTGCTCGG CCTGTGGGGC
GAGCAGACGC AGTTCTCGCT GCCCGAGCGC CTGCCCGACC TGCCGCCCGA GCCCGTCGAC
CGGCCCGACA TCGAACAGGT CGCGATGGCG CAGCGCCTGG ACGTGCAGGC CGCCAAGCTG
CAGGCCGAGG CCACCGCGAA GAACCTCGGC CTGAGCCGTG TCAGCCGCTT CATCAACGTG
CTGGAGCTGG GTTACGCCCG CAACACGTCG AACGAAGCGC CGCGCCAGAC CGGCTACGAG
ATCAGCTTCG AGATCCCGCT GTTCGACTGG AGCGGCTCGC GGGTCGCGAA GGCCGAGGCG
ATCTACATGC GCAGCGTGCA CGAGGCCGCG CAGGTGGCGA TCGAGGCGCG CTCCGAGGTG
CGCCAGGCCT ATGGCGCGTA CCGCACGGCC TGGGACATCG CGCGCCACTA CCGCGACGAA
ATCGTGCCCA ACGCGCAGCG CATCTCCGAG CAGAACCTGC TGCGCTACAA CGGCATGTTC
ATCGGCGTGT TCGAACTGCT GGCCGACGCC CGCGCGCAGG TGGCCAGCGT CAACGCCGCG
ATCGAGGCGC AGCGCGATTA CTGGATCGCG CAGGCCGACC TCGAGATGGC CTTGATCGGC
AAACCGGCCT TGTCCGCCGC CGCTGCGGCC ACGGCGTCCG CCGGTGGCGA CAGCCCCGCG
CACTGA
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| Protein sequence | MAIEKLPMPA IPPRDRSRPP LLGLVALTLA LGGCAGIGSA DGFSAVSATA SEQLGKDLRW
ARSEADLDAI ERRVAELLRA PLTADSAVQI ALLNNRGLQA SFQALGIADA DRVQASRLPN
PGFSFGRSRR GDEREIERSL SIDLGHLLLM PLARQAESRR HAAVQRSVSM QMLGLAASTR
KAYYHAIAAD QTWRYMQQVR ASAEAGAELA SRLARVGNWT ALQQAREQGF YATAALNEAR
AQQGRIASRE QLIRLLGLWG EQTQFSLPER LPDLPPEPVD RPDIEQVAMA QRLDVQAAKL
QAEATAKNLG LSRVSRFINV LELGYARNTS NEAPRQTGYE ISFEIPLFDW SGSRVAKAEA
IYMRSVHEAA QVAIEARSEV RQAYGAYRTA WDIARHYRDE IVPNAQRISE QNLLRYNGMF
IGVFELLADA RAQVASVNAA IEAQRDYWIA QADLEMALIG KPALSAAAAA TASAGGDSPA
H
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