Gene Lcho_1256 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1256 
Symbol 
ID6162913 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp1342900 
End bp1343466 
Gene Length567 bp 
Protein Length188 aa 
Translation table11 
GC content72% 
IMG OID641664010 
Producthypothetical protein 
Protein accessionYP_001790290 
Protein GI171057941 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG3161] 4-hydroxybenzoate synthetase (chorismate lyase) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.000666283 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTCTGCCA CTGCTCATCC GGCGCTGCTG CGTCAACCCT TCCACACCCC GGCCGATGGC 
CCGGCGGTGG CCGCGTTCGC GCAGCGCGAG CTGCAGCTGC TGCTGGCGCA GGACGGCTCG 
GCCACCCGGC TGTGCGAGGT GGTTGCCGCC GGCGCCGTCG CGCTGCAACT GCTGGATCAG 
CAGATCGTCG GACGGGTACC GGCCGAGGTC GGCGAGCGGC TGCCCGGATC GCGCTTCATC 
GAGCGCATCA CCTGCCTGCA CGCGCACGGC GAGGTGATGA TGGACAACCT GTCGTACATC 
GCGCTCGACG GCCTGGCCGC CGACGTGCGG CGCGAGCTCG AGGAAGGCGT GACCCCGATC 
GGCCACCTGC TGGCGCGCAT GTGGGTGCGC CGCGCGTTCT TCGACGCCCC GCCGCCCGCG 
CTGTGCGAAC GGCTGTGGGG CGTGGTCGGG CTGCCTGACG CCGGCGCCAC GCGCAGCTAC 
TGCATCACCA CGCCCGAAGG CCCGTGCATG CTGATCACCG AGACCTTCCG GCGCGGCATG 
CGGATGGCGC CCGCTCGCCA GGCTTGA
 
Protein sequence
MSATAHPALL RQPFHTPADG PAVAAFAQRE LQLLLAQDGS ATRLCEVVAA GAVALQLLDQ 
QIVGRVPAEV GERLPGSRFI ERITCLHAHG EVMMDNLSYI ALDGLAADVR RELEEGVTPI 
GHLLARMWVR RAFFDAPPPA LCERLWGVVG LPDAGATRSY CITTPEGPCM LITETFRRGM 
RMAPARQA