| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1241 |
|---|
| Symbol | |
|---|
| ID | 6160745 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 1329648 |
|---|
| End bp | 1330343 |
|---|
| Gene Length | 696 bp |
|---|
| Protein Length | 231 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 641663995 |
|---|
| Product | peptidase aspartic family |
|---|
| Protein accession | YP_001790275 |
|---|
| Protein GI | 171057926 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3577] Predicted aspartyl protease |
|---|
| TIGRFAM ID | [TIGR02281] clan AA aspartic protease, TIGR02281 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 0.319117 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCACACG ATCTGAGCGC GCTCGCCCGC AGCGCCGCCG CCGGCGCACT GCTCACGCTG
CTGCTGACGG GCGCCCCGGC GCAGGCCCAG AGCGTCAGCC TGGCCGGGCG CATGGGCCAG
CGCGCGCTGC TGCTGATCGA CGGCCAGCCG CGCACGATGG CGCTGGGCGA GACGGCGCAG
GGCGTCAAGC TGCTGATGCT CGACGGCGAG AGCGCCACCG TCGTGGTGCA GGGCCAGCGG
CTGACCCTGC GCATGGGCGC ACAGCCGGCC AGCGTGGGCG TGGCGCCGGC CGTGGCATCC
GGCCCGGCGG GCAACCCGCG CGACAGCGGC CAGCGCATCG TGCTGGGCGC CAGCAGCGAC
GGGCACTTCC AGGTGCACGG CAGCATCGGC GGTGTGTCGG TGCGCTTCCT GGTCGACACC
GGCGCCACCG CGATCTCGAT GTCGCAGCGC GAGGCCGAGC GCCTGGGCCT GCCGTGGCGT
GGCGGCAAGC GCATCACGAT GCAGACCGCC AACGGCATCG CGCCGGCCTG GCGCATCAGC
ATCGACCGGG TGCGCATCGG CGACGTCGAG CTGCACCAGG TCGACACCGT CGTCAGCCAG
CAGGACCTGC CGGTGGTGCT GCTGGGCAAC AGCTTCCTGA ACCGCTTCCG GATGCAGCGC
GACGGCGACC AGATGGTGCT GGAGCGGCGC TACTGA
|
|---|
| Protein sequence | MSHDLSALAR SAAAGALLTL LLTGAPAQAQ SVSLAGRMGQ RALLLIDGQP RTMALGETAQ
GVKLLMLDGE SATVVVQGQR LTLRMGAQPA SVGVAPAVAS GPAGNPRDSG QRIVLGASSD
GHFQVHGSIG GVSVRFLVDT GATAISMSQR EAERLGLPWR GGKRITMQTA NGIAPAWRIS
IDRVRIGDVE LHQVDTVVSQ QDLPVVLLGN SFLNRFRMQR DGDQMVLERR Y
|
|---|
| |