Gene Lcho_1224 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1224 
Symbol 
ID6160796 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp1309852 
End bp1310934 
Gene Length1083 bp 
Protein Length360 aa 
Translation table11 
GC content64% 
IMG OID641663978 
ProductTRAP dicarboxylate transporter- DctP subunit 
Protein accessionYP_001790258 
Protein GI171057909 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG4663] TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones58 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAACGTC GTTCCTTCGT TCGCCAGGCC GGTATCGCCG GTGTTCTCGC CGCGGGTGCC 
GCACCGGCAA TCGTCAATGC GCAAGCCAAC ATCCGCTGGC GCCTGGCGTC GAGCTTCCCG 
AAGTCGCTGG ACACCATCTA CGGCGCCGCC GACGAGTTCT CCAAGAAGGT GTCCGAGCTG 
TCGGGCGGCA AGTTCCAGAT CTCGGTGCAC AGCGGCGGTG AGCTGATGCC CGCGTTCGGC 
GTGGTCGACG GCGTCCAGAA CGGCACGGTC GAGGTGGCGC ACACGGTGCC CTATTACTTC 
TTCGGCAAGG ACGAGACCTT CGCGCTCGGC GCTTGCGTGC CGTTCGGCCT CAACAGCCGT 
CAGATGACCG CCTGGATGCT CGAAGGCAAC GGCCTGAAGC TGATGCGCGA GTTCTACGCG 
CAATACAACA TGATCAACTT CCTGGGCGGC AACACCGGCG CCCAGATGGG CGGCTGGTTC 
CGCAAGCCGC TGACCTCGAT GGCCGACATG AAGGGCCTGA AGTTCCGCAT CGGCGGTTTC 
GCCGGCAAGG TGCTCGAGCG CCTGGGCGGC GTGCCGCAGA ACATCCCCGG TGGCGAGATC 
TACCAGGCGC TCGAAAAGGG CACCATCGAC GCGGCCGAAT GGATCGGCCC CTATGACGAC 
CAGAAGCTCG GCTTCAACAA GGTGGCGCCT CACTACGCCT ATCCGGCCTG GTGGGAAGGC 
GGCCCGCAGA TCGACTTCTT CATCAACCAG AAGGCCTACG GCGCACTGAC GCCCGAGTAC 
AAGGCCATCA TCGAAGCCGC TTCGATGTAC GCACACGTCG ACATGCAGGC CAAGTACGAC 
GGCAAGAACC CGGTAGCGCT CAAGCAGCTG GTGGCCGGCG GCAGCAAGCT GTTCCGCACG 
CCCAAGGACA TCATGGACGC GGCCTTCAAG GAATCGCAGG CCCTGTACAG CGAGCTGTCG 
GCCAAGAACC CGAACTGGAA GAAGGTCTAC ACCGACTTCG CCAAGTTCCG CGCCGAGCAG 
AACCTGTGGT TCCGCTTTGC CGAAGCCGGC TTCGACGACT TCATGCAGCA GCAGAAGCTG 
TAA
 
Protein sequence
MQRRSFVRQA GIAGVLAAGA APAIVNAQAN IRWRLASSFP KSLDTIYGAA DEFSKKVSEL 
SGGKFQISVH SGGELMPAFG VVDGVQNGTV EVAHTVPYYF FGKDETFALG ACVPFGLNSR 
QMTAWMLEGN GLKLMREFYA QYNMINFLGG NTGAQMGGWF RKPLTSMADM KGLKFRIGGF 
AGKVLERLGG VPQNIPGGEI YQALEKGTID AAEWIGPYDD QKLGFNKVAP HYAYPAWWEG 
GPQIDFFINQ KAYGALTPEY KAIIEAASMY AHVDMQAKYD GKNPVALKQL VAGGSKLFRT 
PKDIMDAAFK ESQALYSELS AKNPNWKKVY TDFAKFRAEQ NLWFRFAEAG FDDFMQQQKL