Gene Lcho_1222 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1222 
Symbol 
ID6160794 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp1307450 
End bp1308103 
Gene Length654 bp 
Protein Length217 aa 
Translation table11 
GC content72% 
IMG OID641663976 
Producthypothetical protein 
Protein accessionYP_001790256 
Protein GI171057907 
COG category[S] Function unknown 
COG ID[COG3028] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones65 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGACCCC AAGACATTCC AGACCCCGAG TCGGGCCATC CCGACCCCCG CGACAACGGC 
GACAGCGGCG ACCACGCGGA CGCGTTCGGC GACGAAGGCG AGCGCCCCAG CAAGACCCGG 
CTGAAGAAGG AATCGCACGA TCTGCAGGCC CTCGGCCGCG ACCTGCTGGA GCTGCCGCCG 
CAGCGCCTGG CCGCGATCGA CATGCCCGAG CGGCTGCGCG ATGCGCTCGA GGAGATGCGC 
CGCACCCGCT CGCACGAAGG CAAGCGCCGG CAGTTGCAGT ACGTCGGCAA GATCATGCGA 
TTGATCGACC CGGAGCCGCT GCGCGAGGCG GTGGCGTCGT TCCGCGTGCC TGGCGCACGC 
GAGACGCTGG CGCTGCACGA GGCCGAACGC TGGCGCGACC GTCTGGTGCG CGACGACGGC 
GCGCTGACCG AATGGCTGGC CGCCCACCCG CAGACCGACA GCCAGGCGCT GCGCGCGCTG 
ATCCGCAACG CCCGCAAGGA AGAGCAGGCC CACGTGGCGC TGCCGCACGA CGGCCCGACC 
GAGCGCAAGG GCCGGGCCTA CCGCGATCTG TTCCAGCATG TGCGCAGCAC GCTCGCGGCG 
GCCGAACGCG CGGCCACCGA AGCCGAGGGC GACGAAGGAG ACGAGGATGA GTGA
 
Protein sequence
MRPQDIPDPE SGHPDPRDNG DSGDHADAFG DEGERPSKTR LKKESHDLQA LGRDLLELPP 
QRLAAIDMPE RLRDALEEMR RTRSHEGKRR QLQYVGKIMR LIDPEPLREA VASFRVPGAR 
ETLALHEAER WRDRLVRDDG ALTEWLAAHP QTDSQALRAL IRNARKEEQA HVALPHDGPT 
ERKGRAYRDL FQHVRSTLAA AERAATEAEG DEGDEDE