| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1214 |
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| Symbol | |
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| ID | 6163847 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 1299705 |
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| End bp | 1300847 |
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| Gene Length | 1143 bp |
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| Protein Length | 380 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641663968 |
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| Product | extracellular ligand-binding receptor |
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| Protein accession | YP_001790248 |
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| Protein GI | 171057899 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 79 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAGAC GCCACACCCT CGCCATCGCC GCCGCAGGCC TGCTGACCGC GCTCGCGGCG
CCGATCCACG CGCAGGAGGT CATCCGCATC GCCAACGTGG TCGAGCTGTC GGGCAGCGGC
GCGAGCCCGG GCACCTATTT CCGCGACGGC GTCGAGCTGG CGGTCAAGGA GATCAACGCG
GCCGGCGGCA TCCTGGGCCG GAAGATCGTC ACCACCACCG CCGACACCCA GACCCAGCCC
GGCATCGCCA AGGGCCTGGC TGCCAAGGCG GTCGACGACG GCGCGTTCGC GGTGTTCGGC
CCGGTGTATT CGGGCTCGAT CATGGTCAGC ATGGCCGAGA CGCGCCGCGC CGAAGTGCCC
AACTTCACCG GCGGCGAGGC CGCGGCGATC ACGCAGCAGG GCAACCCGTA CGTCTTCCGC
ACCGCCTTCG GCCAGTCGAG CTCCTTCCCC AAGCTGGCGC GCTACATCAA CACCAAGGCC
CGGACGCTGG TGGTGATCTA CCAGAACAAC GACTTCGGCA AGGGCGGGCG CGACACCCTC
ACCAAGCTGC TCGACGGCGG CCCGACCAGG ATCGTCGGCG AAATGGCCAC CGACCAGGGC
CAGATCGACT TCTCGGCCGC CGTCATCAAG GCCAGGCAGG CCAACGCCGA CGCGGTGTTC
GTCTACCTGA CCGAAGAAGA ATCGGCCCGC GCGCTCAAGG AACTGCGCAA GCAGGGCTGG
AGCAAGCCCA TCATCGGCGA GACCGTGCTG GTGAGCCAGA AGGTGATCGA GCTGGCCGGC
GAAGCGGCCA ACGGCGTCAC CGGCCATGTC GGCCTGACGG TCGATGCGCC CAACCCCGAG
ATGCTCAAGT TCAAGGCCAA GTTCTATCAG GCCTACAAGT ACATCCCCGA TCACAACGGC
ATCAAGAGCT ACATGGGCGT CTACACGCTC AAGGCTGCGA TCGAGAAGGC CGGCAAGCTC
GACCGCGTGG CGGTGGCCAA GGCGATGAAG GGTCTGGAGG TGAAGGCCGC CAAGTACCCC
GGCGTGATCA TGGACGTGAG CTTCGACGAC AAGGGCGATC TCGACCGCGA GAGCTTCCTG
GTCGAAGTGA AGGACGGCCG CCAGGTCGTC GTGGCGACGT TGCCGCCGCT GGGCAAGAAG
TGA
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| Protein sequence | MNRRHTLAIA AAGLLTALAA PIHAQEVIRI ANVVELSGSG ASPGTYFRDG VELAVKEINA
AGGILGRKIV TTTADTQTQP GIAKGLAAKA VDDGAFAVFG PVYSGSIMVS MAETRRAEVP
NFTGGEAAAI TQQGNPYVFR TAFGQSSSFP KLARYINTKA RTLVVIYQNN DFGKGGRDTL
TKLLDGGPTR IVGEMATDQG QIDFSAAVIK ARQANADAVF VYLTEEESAR ALKELRKQGW
SKPIIGETVL VSQKVIELAG EAANGVTGHV GLTVDAPNPE MLKFKAKFYQ AYKYIPDHNG
IKSYMGVYTL KAAIEKAGKL DRVAVAKAMK GLEVKAAKYP GVIMDVSFDD KGDLDRESFL
VEVKDGRQVV VATLPPLGKK
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