Gene Lcho_1191 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1191 
Symbol 
ID6162971 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp1276622 
End bp1277782 
Gene Length1161 bp 
Protein Length386 aa 
Translation table11 
GC content68% 
IMG OID641663945 
Productacyl-CoA dehydrogenase domain-containing protein 
Protein accessionYP_001790225 
Protein GI171057876 
COG category[I] Lipid transport and metabolism 
COG ID[COG1960] Acyl-CoA dehydrogenases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones61 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCATCG ACACCGAATC ATTCGACCTG CTGCTCGCCA GCGTGCAGCG CTTCATCCGC 
GAACGCCTCG TGCCGGCCGA AAACGCCGTC GAGGAGCACG ACGAGGTGCC GGCCGACATC 
ATCGAGGACA TGAAGGAGAT GGGCCTGTTC GGCCTGACGG TGCCCGAGGA ATACGGCGGC 
ATCGGCCTGT CGGTGAGCCA GGAGGTGCTG GTCAACTACG AGCTGGGTCG CACCGCGGCG 
GCTTTCCGTT CGGTGTTCGG CACCAACATC GGCATCGGCT CGCAAGGCAT CCTGATCGAC 
GGCACGCCCG AGCAGAAGGC CGATTACCTG CCCCGGGTCG CCAGCGGCGA GCTGATCATG 
TCGTTTGCGC TGACCGAGCC CGACGCCGGC ACCGACGCGG CCTCGCTCAA GACCCGCGCC 
GAGCTCGACG GTGACCACTA CATCCTCAAC GGCACCAAGC GCTTCATCAC CAACGCGCCG 
CGCGCCGGCG CCTTCACGCT GATGGCGCGC ACCGGCGGGC CGGGCGCGGG CGGCGTGTCG 
TCCTTCATCG TGCCGGCCGG CCTGCCGGGC CTCAAGCTCG GCAAGCCCGA CAAGAAGATG 
GGCCAGCGCG GCACCAAGAC CTGCGACGTG ATCCTGGAGA ACGTGCGCGT GCCGGCGGCC 
AACATCATCG GCGGCGTGCC GGGGCAGGGC TTCAAGACCG CGATGAAGGT GCTCGACCGC 
GGCCGCCTCA ACATCTCGGC CGTGTCCTGC GGCCTGGCCT CGCGCATCAT CGACGAGTCG 
CGCCGCTATG CGCGCGAGCG CAAGCAGTTC GGCAAGGCCA TCGGCGAGTT CCAGCTGATC 
CAGGCCATGC TGGCCGACAG CCAGGCCGAG ATGCTGGCCG GCTGGTCGCT GGTCAAGGAC 
GTGGCCCTGC GCTTCGACGC CAAGCCGGCC CATGTGTCGG ACCCGGACGT CTCGATGCGC 
GTGTCCTGTG CCAAGCTGTT CGCCACCGAG ATGGTGGGCC GCGTGGCCGA CCGCGGCGTG 
CAGATCCACG GTGGCGCCGG CTACATCAAC GAATACCCGG TGGAACGTTT CTACCGCGAT 
GCCCGCCTGC TGCGCCTGTA CGAAGGCACG ACGCAGGTCC AGCAGATCAT CATCGGCCGC 
GAGCTGATCA GCCGCGACTG A
 
Protein sequence
MAIDTESFDL LLASVQRFIR ERLVPAENAV EEHDEVPADI IEDMKEMGLF GLTVPEEYGG 
IGLSVSQEVL VNYELGRTAA AFRSVFGTNI GIGSQGILID GTPEQKADYL PRVASGELIM 
SFALTEPDAG TDAASLKTRA ELDGDHYILN GTKRFITNAP RAGAFTLMAR TGGPGAGGVS 
SFIVPAGLPG LKLGKPDKKM GQRGTKTCDV ILENVRVPAA NIIGGVPGQG FKTAMKVLDR 
GRLNISAVSC GLASRIIDES RRYARERKQF GKAIGEFQLI QAMLADSQAE MLAGWSLVKD 
VALRFDAKPA HVSDPDVSMR VSCAKLFATE MVGRVADRGV QIHGGAGYIN EYPVERFYRD 
ARLLRLYEGT TQVQQIIIGR ELISRD