| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1185 |
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| Symbol | |
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| ID | 6163486 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 1270266 |
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| End bp | 1271033 |
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| Gene Length | 768 bp |
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| Protein Length | 255 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641663939 |
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| Product | 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase |
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| Protein accession | YP_001790219 |
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| Protein GI | 171057870 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4221] Short-chain alcohol dehydrogenase of unknown specificity |
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| TIGRFAM ID | [TIGR03206] 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 0.938573 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCAGAAAT TCGACAACAA GACCGTCATC GTCACCGGTG GTGGTGGGGG CATCGGCGGC
GCAACCTGCC GCCGTTTCGC GGCCGAGGGT GCCAAGGTCG CGGTGTTCGA CCGCAACCTG
GCCGCAGCCG AAGACGTCGC CGCCGGCATC CGTGCCGCCG GTGGCCAGGC CCAGGCCTAC
GCCGCCGACA TCACCGACCG CGCCAGCGTC GATGCCGCCG TGGCCGCCAC CGAGGCGCAG
CTCGGCCCGA TCGCCGTGCT GGTCAACAAC GCCGGCTGGG ACGTCTTCAA GCCCTTCGTC
AAGACCGAGC CGGCCGAGTG GGACCGCCTG ATCGCCATCA ACCTGACCGG CGCGCTGCAC
ATGCACCACG CGGTGCTGCC GGGCATGGTC GAGCGCAAGT ACGGCCGCAT CGTCAACATC
GCCTCCGACG CGGCACGCGG CGGCTCGTCG GGCGAGGCGG TCTACGCGGC CTGCAAGGGC
GGCCTGGTGG CGCTGTCCAA GACCCTGGCG CGCGAGCACG CCCGCCACGG CATCACCGTC
AACGTGGTCT GCCCCGGCCC GACCGACACC GCCTTGCTGG CCGGTGTGGC CGAAGGTGCA
CGTGACCCGG CCAAGCTGAT CGAGGCCTTC CGCAGCGCCA TCCCGCTGGG CCGCCTGGGC
CAGCCCGACG ACCTGGCCAG CGCGATCGCC TTCTTCGGCA GCGACGACGC CTCGTTCATC
ACCGGCCAGG TGATCAGCGT CTCCGGCGGC CTGACGATGC ACGGCTGA
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| Protein sequence | MQKFDNKTVI VTGGGGGIGG ATCRRFAAEG AKVAVFDRNL AAAEDVAAGI RAAGGQAQAY
AADITDRASV DAAVAATEAQ LGPIAVLVNN AGWDVFKPFV KTEPAEWDRL IAINLTGALH
MHHAVLPGMV ERKYGRIVNI ASDAARGGSS GEAVYAACKG GLVALSKTLA REHARHGITV
NVVCPGPTDT ALLAGVAEGA RDPAKLIEAF RSAIPLGRLG QPDDLASAIA FFGSDDASFI
TGQVISVSGG LTMHG
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