| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1183 |
|---|
| Symbol | |
|---|
| ID | 6161726 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 1268261 |
|---|
| End bp | 1269562 |
|---|
| Gene Length | 1302 bp |
|---|
| Protein Length | 433 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 641663937 |
|---|
| Product | membrane protein-like protein |
|---|
| Protein accession | YP_001790217 |
|---|
| Protein GI | 171057868 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3174] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 0.647049 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGCTGAATG CCCAATCGCT TGCACTCGAT CCCGTCGTCG CCGGGCTCGC CTCGGCCCTG
GCGGTCGGCC TGCTGATCGG CCTGGAGCGC GGCTGGAGCG AGCGGCTGCG GGCCGAGGGC
AGCCGGGTCG CAGGCCTGCG CACCTTCGGC CTGATCGGCT TGTTCGGTGG TGTCAGCGCC
ACCTTGCGGG GCGAGTTCGG CGCTGCCGTG CTGGTGGCCG GGCTGATCGG CCTGGCCGTG
CTCGGCGCCG TCTCGTACCG TGAATGGGTG CGCGCCAGCG GCAGCCTCAG CGCCACCAGC
ACCATCGCCG CGCTGCTGAC CTACGTGCTC GGCGCGCTGG CCGCGTCGGG TGCGCCGGCG
CTGGCGGTCG GCGTGGCGGT GGTCGCCGCG GTGCTGCTCA ACCTCAAGCC CACGCTGCAC
CGCTGGCTGC GCCTGATCGA GCACCGCGAG CTGAGCGCCG CGCTGCAGAT GCTGGTGCTG
TCGGTGGTCG TGCTGCCGCT GCTGCCCGAT CGCGGCTTCG GCCCCTACGA GGCCTTGAAT
CCCTACCGCA TGTGGTGGGC GGTGGTGCTG GTGTCGGGGC TGTCGCTGGG CGGGGACATC
GCCATGCGCT TCAGCGGGCC GCAGCGCGGC CTGATCTGGA CCGGCCTGCT CGGCGGCCTG
GCCTCGTCGA CCGCGGCCAC GCTGGCCTTG TCGCGCCGTG TGCGCCAGGC GCCCGCGCAT
GTCGATGCCG CGGTCGCCGG CACCCTGGCA GCCTGTGGCG TGATGTTCAT CCGCATGACG
GTGATCGTGC TGACGCTGCA GCCGGCGCTC GGCACGAGCC TGACCGCGCC GCTGCTGGTG
CCCGGCGGGG TGCTGCTCGC GCTCAGCGTC CTGCAGTGGC GGCGGCGCGA GCCGGCGCCG
CCGGGTGCCG TCGCCAGCCC TGAAACCCCC GCCGCCGACG AGCCCGCGCC GTTCGACCTC
GGCGTGGCGC TCGGCTTCGG CGCCTTTCTC GGCCTGATGG CGGTGCTGAC CCGACTGGTG
CACGACCTGT ACGGCGCGCT CGGCCTGTAC GGGCTGGCGG CGCTGTCGGG GCTGGCCGAT
GTCGATGCGA TCCTGATCTC GATCACCCGC ATGCATGCCG GCGACGGCGT GGCGACCACC
GCCATCGTGC TGGCCGTCGG CCTGGCCGTG GGCTCGAACA TGCTGGCCAA GGCCGGCATC
GCCTGGGTGG TCGGCGGCGC GGCGATGGGC CGGCGCGTGC TGGCCGGCTA CGGCGTGGCC
GCGCTCGCGG GCGTGCTGGC CGCCGCCAGC CTGTCGGGCT GA
|
|---|
| Protein sequence | MLNAQSLALD PVVAGLASAL AVGLLIGLER GWSERLRAEG SRVAGLRTFG LIGLFGGVSA
TLRGEFGAAV LVAGLIGLAV LGAVSYREWV RASGSLSATS TIAALLTYVL GALAASGAPA
LAVGVAVVAA VLLNLKPTLH RWLRLIEHRE LSAALQMLVL SVVVLPLLPD RGFGPYEALN
PYRMWWAVVL VSGLSLGGDI AMRFSGPQRG LIWTGLLGGL ASSTAATLAL SRRVRQAPAH
VDAAVAGTLA ACGVMFIRMT VIVLTLQPAL GTSLTAPLLV PGGVLLALSV LQWRRREPAP
PGAVASPETP AADEPAPFDL GVALGFGAFL GLMAVLTRLV HDLYGALGLY GLAALSGLAD
VDAILISITR MHAGDGVATT AIVLAVGLAV GSNMLAKAGI AWVVGGAAMG RRVLAGYGVA
ALAGVLAAAS LSG
|
|---|
| |