| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1175 |
|---|
| Symbol | |
|---|
| ID | 6163061 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 1257928 |
|---|
| End bp | 1258785 |
|---|
| Gene Length | 858 bp |
|---|
| Protein Length | 285 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641663929 |
|---|
| Product | 2-dehydro-3-deoxyphosphooctonate aldolase |
|---|
| Protein accession | YP_001790209 |
|---|
| Protein GI | 171057860 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2877] 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase |
|---|
| TIGRFAM ID | [TIGR01362] 3-deoxy-8-phosphooctulonate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 0.985506 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTGT GTGGATTCGA CGTCGGCATC GACCAGCCGT TCTTCCTGAT CGCCGGCACC
TGCTCGATCG AGGGGCTGCA GATGTCGCTC GACGTGGCCG GCCTGCTCAA GGAGGCCTGC
GCCGGCCTGG GCATCCCGCT GATCTACAAG GGCTCGTTCG ACAAGGCCAA CCGCTCGTCG
GGCACGACCA ACCGCGGCTT GGGGCTGGAA GCCGGCCTGA AGATCCTCGA CGAGGTGCGC
CGCCAGACCG GCCTGCCGGT GCTGACCGAC GTGCATGACG AGTCGCAGGT GGCCGAGGTC
GCCAGCGTGG TCGACGTGCT GCAGACGCCG GCCTTCCTGT GCCGCCAGAC CGACTTCATC
CGCGCCGTGG CGATGTCGGG CAAGCCGGTC AACATCAAGA AGGGCCAGTT CCTCGCGCCC
TGGGACATGA AGAACGTCAT CGACAAGGCC CGCGCCGCCG CGCGTGACGC CGGCCTGTCG
GAAGACCGCT TCCTGGCCTG CGAGCGCGGC GTCAGCTTCG GCTACAACAA CCTGGTGGCC
GACATGACCA GCCTGGCCGA GATGCGCAAC ACCGGCGCGC CGGTGGTGTT CGACGTCACC
CACTCGGTGC AGAAGCCCGG TGGCCTGGGC GGCAGCAGCG GCGGTGCGCG CGAGATGGTG
CCGGTGCTGG CGCGTGCAGG CGTGGCGGTG GGCGTGGCGG GCCTCTTCAT GGAGACCCAC
CCCGATCCGG CCAAGGCCTT CAGCGACGGC CCGAACGCCG TGCCCCTGAA ACACATGAAG
ACGCTGCTCG AACAGCTGGT GGCGCTCGAC CGCGTCGTCA AGACCCGACC CCTGCTGGAA
AACGATTTCA GCTGCTGA
|
|---|
| Protein sequence | MKLCGFDVGI DQPFFLIAGT CSIEGLQMSL DVAGLLKEAC AGLGIPLIYK GSFDKANRSS
GTTNRGLGLE AGLKILDEVR RQTGLPVLTD VHDESQVAEV ASVVDVLQTP AFLCRQTDFI
RAVAMSGKPV NIKKGQFLAP WDMKNVIDKA RAAARDAGLS EDRFLACERG VSFGYNNLVA
DMTSLAEMRN TGAPVVFDVT HSVQKPGGLG GSSGGAREMV PVLARAGVAV GVAGLFMETH
PDPAKAFSDG PNAVPLKHMK TLLEQLVALD RVVKTRPLLE NDFSC
|
|---|
| |