Gene Lcho_1167 details

Gene Information

• Locus tag: Lcho_1167
• ID: 6162674
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: -
• Start bp: 1249839
• End bp: 1250441
• Gene Length: 603 bp
• Protein Length: 200 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 641663921
• Product: multiple antibiotic resistance (MarC)-related protein
• Protein accession: YP_001790201
• Protein GI: 171057852
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG2095] Multiple antibiotic transporter
• TIGRFAM ID: [TIGR00427] membrane protein, MarC family

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 43
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGATCACA GCTTCGCCTC CGCCCTCCTC CTGCTCCTGC TGGTGCTCGA CCCGCTCGGC 
AGCATCCCCA TCTTCATCTC GGTGCTCAAG GGCGTGGCGC CCGAACGGCG CACGCGGGTG 
GCGCTGCGCG AGGCGCTGAT CGCGTTCAGC GTGCTGGCGG TGTTCATGGT CAGCGGCCAG 
CATTTCCTGA CGCTGATGCG GCTGTCCGAA CGCTCGCTCG AAGTCGCCGG CGGCGTGATC 
CTGATCATCA TCGCCATCCG CATGATCTTC TCCGGCGGCA GCGAGATCTA CAGCCAGGAC 
GGTGAACCGC GCGAGCCCTT CATCTTTCCG CTCGCGGTGC CGCTGCTGGC CGGGCCGTCG 
GCGATGGCCA CCGTGCTGCT GCTGGCCTCG CGCCAGCCCG ACCGCCTGCT CGACTGGGCC 
GGCGCGCTGA CCGCCGCGAT GGCGATCTGC GCCACGGTGC TGCTGCTGGC CGAGCGCATC 
CGCAAGCTGC TGGGCGACTC GATGGTCTCG GCGATCGAGA AGCTGATGGG CCTGGTGCTG 
ACCGCGGTGG CGGTCGAGAT GATCCTGGCC GGGCTCAAGC GCTACTTCCT GAACCCGCTC 
TGA 

 

Protein sequence

MDHSFASALL LLLLVLDPLG SIPIFISVLK GVAPERRTRV ALREALIAFS VLAVFMVSGQ 
HFLTLMRLSE RSLEVAGGVI LIIIAIRMIF SGGSEIYSQD GEPREPFIFP LAVPLLAGPS 
AMATVLLLAS RQPDRLLDWA GALTAAMAIC ATVLLLAERI RKLLGDSMVS AIEKLMGLVL 
TAVAVEMILA GLKRYFLNPL