| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1161 |
|---|
| Symbol | |
|---|
| ID | 6164034 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 1243065 |
|---|
| End bp | 1245449 |
|---|
| Gene Length | 2385 bp |
|---|
| Protein Length | 794 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641663915 |
|---|
| Product | DEAD/DEAH box helicase domain-containing protein |
|---|
| Protein accession | YP_001790195 |
|---|
| Protein GI | 171057846 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1203] Predicted helicases |
|---|
| TIGRFAM ID | [TIGR01587] CRISPR-associated helicase Cas3 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 47 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGGAGT TCTGGGCACA CAGCCCGTCG ACCGCATCAA AAGGTTCGGG CCATTTGCTG
CACGATCACC TGCAGTCCGT GGCCGAACGG GCGTGCAAAA GTTTCATGCA GCAGCCAGGC
AGTGATCTGG CCTACCTTGC CGGGCTGTGG CATGACCTGG GCAAGTACCG CCCCGGCTTC
CAGCGCTACA TCCGCATGGC GGCTGATGCG CACATCGAAG GCAAGCTGCC CCAAGGAAGC
GACAAGAGCC ACTCGGCTGC CGGTGCGCTG TGGGCGCTGG AACATCTGTC GAAGCAGCAC
GGCGCCGAAG GCTGCGTGGC TGCACGGATC CTTCAATACG TGATCGCGGG GCACCACGCC
GGGCTCGACA ACTGGGACGA CGGGCTCAAG CCACGCTTGG CAGGCGCAGA CACACATCGA
GAATTCACCA GCGCCTTGGA CGCACAGCCG CCCGAAGCCG TATTGCGCCC CCCGATCGAT
CGACCGGCGG TCAAAACCTT GCCCCTGCCG TTCAAGGGGC CGGAAGAAAT CCCCGGCCGG
TTCGCGCTCT GGGTACGCAT GCTGTTCTCG GCCCTGGTCG ATGCCGACTT CCTAGATACC
GAGGCATTCA TGAATCCGAC CACAGCGCAG GCCCGCGAGG CTGAGACGCT GCCGATGTGT
GCGCTGCTGG CCTGCTTCGA CACCTACATG GAACTCAAGG CCGAAACGCT CGTCGCCGCC
GGCCTGGCCA ACACGCTGGT CAACCGCCGC CGTGCCGAGG TGTTGGCTGC CTGCAGAACC
AAGGCGGCCG AAGCACCCGG CACGTTCACC CTGACCGTAC CCACAGGCGG TGGAAAGACG
CTCGCGGGCC TGGCCTTCGC ACTCACCCAC GCGGTGCATC ACGGCAAGCG TCGGGTCGTG
ATGGTGATTC CGTACACCAG CATCATCGAG CAGACCGCAC AGGTCTACCG CGAGGTGTTC
GCCCCGCTGG GTGACGAGGT CGTGCTCGAA CACCACAGCA ACGCCGAGTC CGACGAGCGC
GACGAAACCT CGCGCTCGCG CCTCGCCTGC GAGAACTGGG ACGCACCGGT GATCGTCACC
ACCAGCGTGC AACTGTTCGA GAGCCTGTTC GCCCGCAAGA CCTCGCGCTG CCGCAAGCTG
CACAACCTGG CGCACAGCGT GCTGGTGATC GACGAGGCCC AGCTACTGCC GGTGCAGTAC
CTGCAGCCGG TGGTCGACGT GCTGCGTCTG CTCGTCCGCG ACCACGGCGT GACCGTCGTT
CTGTGTACCG CCACCCAGCC GATGCTGACC GAACAACGCC ACTTCGGCGG GCGTGGCCTG
CGCGGCTACC AGAGCGGCGA GGTGCGCGCC ATCATCGACG ACGAGGCCGG GCTCTACAAA
GCCTTGCAAC GCGTGCGTGT GCACCTGCCG TCGGACCTGA CAACACCTCA GCCCTGGGAC
GCCACGGCGC AGGCCCTGCA ACAACACGAC GCCGTGCTCA CCATCGTCAG CCGCCGGGCT
GACGCACGAG ATCTGTATGA CCGCCTGAAA CGCGAGCTAC CCACCGGCGC GCGCGGCCTG
CACCACCTGT CGGCCTTGAT GTGCGCCCAG CACCGCAGCG AGGTGATCGC CGACATCAAG
GCGGCACTGG TCATACGACG CGAGGCACTG GCATGCGGCG ATGCAGCCGA GCCGGTGCGC
GTGGTCAGCA CTCAATTGGT GGAAGCAGGT GTCGACCTCG ATTTCCCGGT GGTCTATCGC
GCGCTGGCCG GGCTCGACTC GATCGCTCAG GCCGCCGGCC GCTGCAATCG CGAGGGCCGG
CTTGCGATGG GCGAGGTGCA TGTCTTCGTG CCGCCCAAGG CGCCGCCAGC CGGTTTGATG
CGCCAAGCCG CACAAACCTG CGCGCTGGTG TGGGATGACA TCGGCGACAC CGATCCGCTG
GCACTCGACC GCGTCTCGCG TTACTTCGCT CACCTGTACG GCAATGCCAA CACGCTGGAC
ATCGGCGACG TCTGCGATGC GCTGCGTCTG ACAGTGGACA CCCAGGCCTG GACGCTGCCG
GTGCGCTTTC GCGACGCGGC CGAGAACTTC CGCCTCATCG ACAACGAAGA GGCCGCCACG
GTCATCGTGC GCTACCGCAG CCCGCGCTGC CGCGACAACG TCGACCAGCT GATCGCGATG
CTCGAACGCG ACGGACCGCA GCGCTGGCTG ATGCGCAAGC TGCAGCGTTA CGGCGTGACG
ATCTATCGCC ATGCCCTGCA GCGCCTGCTG GCCTGTGGCG ACATCAGCGA ACTGGCCGGT
GTGCCCGGTC TCTACGTGCA GACCGAATCC GATGTGTTCT ACGACCCGGT GCTCGGCGTC
CAGGTCGGCG GCGCTCCGGG TGACCCGGCT GCCTTTGTGT TTTGA
|
|---|
| Protein sequence | MSEFWAHSPS TASKGSGHLL HDHLQSVAER ACKSFMQQPG SDLAYLAGLW HDLGKYRPGF
QRYIRMAADA HIEGKLPQGS DKSHSAAGAL WALEHLSKQH GAEGCVAARI LQYVIAGHHA
GLDNWDDGLK PRLAGADTHR EFTSALDAQP PEAVLRPPID RPAVKTLPLP FKGPEEIPGR
FALWVRMLFS ALVDADFLDT EAFMNPTTAQ AREAETLPMC ALLACFDTYM ELKAETLVAA
GLANTLVNRR RAEVLAACRT KAAEAPGTFT LTVPTGGGKT LAGLAFALTH AVHHGKRRVV
MVIPYTSIIE QTAQVYREVF APLGDEVVLE HHSNAESDER DETSRSRLAC ENWDAPVIVT
TSVQLFESLF ARKTSRCRKL HNLAHSVLVI DEAQLLPVQY LQPVVDVLRL LVRDHGVTVV
LCTATQPMLT EQRHFGGRGL RGYQSGEVRA IIDDEAGLYK ALQRVRVHLP SDLTTPQPWD
ATAQALQQHD AVLTIVSRRA DARDLYDRLK RELPTGARGL HHLSALMCAQ HRSEVIADIK
AALVIRREAL ACGDAAEPVR VVSTQLVEAG VDLDFPVVYR ALAGLDSIAQ AAGRCNREGR
LAMGEVHVFV PPKAPPAGLM RQAAQTCALV WDDIGDTDPL ALDRVSRYFA HLYGNANTLD
IGDVCDALRL TVDTQAWTLP VRFRDAAENF RLIDNEEAAT VIVRYRSPRC RDNVDQLIAM
LERDGPQRWL MRKLQRYGVT IYRHALQRLL ACGDISELAG VPGLYVQTES DVFYDPVLGV
QVGGAPGDPA AFVF
|
|---|
| |