Gene Lcho_1155 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1155 
Symbol 
ID6163078 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp1238398 
End bp1239036 
Gene Length639 bp 
Protein Length212 aa 
Translation table11 
GC content67% 
IMG OID641663909 
ProductCRISPR-associated Cas4 family protein 
Protein accessionYP_001790189 
Protein GI171057840 
COG category[L] Replication, recombination and repair 
COG ID[COG1468] RecB family exonuclease 
TIGRFAM ID[TIGR00372] CRISPR-associated protein Cas4 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones48 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGAAG AACCCGACCC CCTCCCTCTC TCGGCCCTGC AGCATTGGGC CTACTGCCCA 
CGCCAATGCG GCCTGATCCA CCTCGAACAA GCCTTCGACG ACAACCTGCA CACGCTGCGT
GGCCAGGCCG TGCACAAGCA GGTCGATCAA CCCGGCATGG AAATCCGCAA GGGCCTGCGG
GTGGAGCGTG CGCTGCCGGT CTGGCACGAC ACCCTGGGCC TGATCGGCAA GACCGACGTG
GTCGAGTTCG AACCCGACGG CAGCCCCTAT CCGGTCGAAT ACAAACACGG CTCGCGCCAC
AAGGCCGCAG ACATCGCTGC GGCTGACGAT CTTCAATTGG CCGCCCAGGC GTTGTGCCTG
GAGGCGATGA GCGGTCACCC GGTACCCGAG GGCGCGATCT TCTACGCCAG TTCCAAGCGC
CGCCGGGTGG TGCCGATCAG CACCGAACTG CGCCAGCAGG TGGCCGACAC CGCGGCAGCC
ATCCGCACCA TGTTGACCGG CGGCACGCTG CCGCCACCCA CCACCGACGA GCGGCGTTGC
AAAGGCTGCT CGCTGCGCGA CCGCTGCCAG CCTGAAGCCT GGCGGCAGAT GCACACCGGC
GTCGATGTGC GCGCCCGACT GTTCGACCCG GAGCTTTGA
 
Protein sequence
MTEEPDPLPL SALQHWAYCP RQCGLIHLEQ AFDDNLHTLR GQAVHKQVDQ PGMEIRKGLR 
VERALPVWHD TLGLIGKTDV VEFEPDGSPY PVEYKHGSRH KAADIAAADD LQLAAQALCL
EAMSGHPVPE GAIFYASSKR RRVVPISTEL RQQVADTAAA IRTMLTGGTL PPPTTDERRC
KGCSLRDRCQ PEAWRQMHTG VDVRARLFDP EL