Gene Lcho_1154 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1154 
Symbol 
ID6163077 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp1237367 
End bp1238398 
Gene Length1032 bp 
Protein Length343 aa 
Translation table11 
GC content68% 
IMG OID641663908 
ProductCRISPR-associated Cas1 family protein 
Protein accessionYP_001790188 
Protein GI171057839 
COG category[L] Replication, recombination and repair 
COG ID[COG1518] Uncharacterized protein predicted to be involved in DNA repair 
TIGRFAM ID[TIGR00287] CRISPR-associated endonuclease Cas1
[TIGR03640] CRISPR-associated endonuclease Cas1, DVULG subtype 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones46 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAACTCC TCAACACCCT CTACATCACC CTGCCCGACA GCTACCTGCG GCTCGACAAC 
GACACCCTGC GCGTGGTCGA CGAAGACAAG GAAACCCGCC TGCGCGTGCC GCTGCACCAT 
CTGCAGGCGG TGGTGTGTTT CGGCCACGTC GGCCTGAGCG CCAAGCTGAT GCACCGGCTG 
GCCGAAGACG GCATCGCCCT CGTGCTGCTC GATGCCAACG GCCGCTTCAA GGCGCGGCTG 
GAAGGCGAGA CCAGCGGCAA CGTGCTGTTG CGCCGCGCCC ATCACCAGGC GGTCGACAGC 
GCCGCGTTCA CGCTCGAAGC GGCTCGTTGC ATCGTGGCCG GCAAGCTGCG CAACCAGCGC 
CAGGTGCTGC TGCGCGGCGC CCGTGAATCG AAGGATCCGG GTGAAGAAGC CCAGCTCACC 
CGCGCCGCAC AAGACCTGGC GGCCAGCCTG CGCGCACTGC CCGCGGCGGC CGATCTCGAC 
GTCCTCCGCG GCATCGAGGG CGAGGCCGCG CGCACCTACT TTGCCGCGCT CAACCTGCTG 
GTACGTGCCG ACCGGCGCGA TCATTTCCAG ATGAACGGCC GCAGCCGCCG CCCGCCGCGC 
GACCGCATGA ACGCGCTGCT CAGCTTCTTC TATGCAATGT GGATGAACGA CTGCCGCAGT 
GCCATCGAGG CCGCCGGGCT CGATCCGCAG ATGGGCTTTC TGCATGCACT GAGGCCGGGG 
CGCGCGGCGC TGGCGCTCGA TCTGATGGAG GAGTTTCGCC CGTTCGCCGA CCGGCTGGCG 
CTCACGCTGG TAAACCGCGC GCAGGTCAAC GAAGACGACT TCGTGGAGCG TGAAGGCGGC 
GCCGTACTGC TGGAGGGCGA TGCGCGCAAG GCGGTGGTGG TGGCGTATCA GGAGCGCAAG 
CAGGAGGAGT TGACACACCC GCTGCTGGCC GAAAGCGTTC CGCTCGGACT GGTGCCGCTG 
GTGCAGGCGC GGTTGCTGGC GCGCCATGTG CGCGGCGAGG CGCCGAGTTA CGTGCCATTT 
GCGATGCGCT GA
 
Protein sequence
MQLLNTLYIT LPDSYLRLDN DTLRVVDEDK ETRLRVPLHH LQAVVCFGHV GLSAKLMHRL 
AEDGIALVLL DANGRFKARL EGETSGNVLL RRAHHQAVDS AAFTLEAARC IVAGKLRNQR 
QVLLRGARES KDPGEEAQLT RAAQDLAASL RALPAAADLD VLRGIEGEAA RTYFAALNLL 
VRADRRDHFQ MNGRSRRPPR DRMNALLSFF YAMWMNDCRS AIEAAGLDPQ MGFLHALRPG 
RAALALDLME EFRPFADRLA LTLVNRAQVN EDDFVEREGG AVLLEGDARK AVVVAYQERK 
QEELTHPLLA ESVPLGLVPL VQARLLARHV RGEAPSYVPF AMR