Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_1148 |
Symbol | |
ID | 6164027 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 1229311 |
End bp | 1230162 |
Gene Length | 852 bp |
Protein Length | 283 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 641663902 |
Product | extracellular solute-binding protein |
Protein accession | YP_001790182 |
Protein GI | 171057833 |
COG category | [E] Amino acid transport and metabolism [T] Signal transduction mechanisms |
COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 41 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCCGCT GGACCACGCG TCGTTTCCTG AAGACCGCCG GCTTCGTTGC CGCCGCCCTC GTGCTCGTCG CCTGCGGCAA GAAGGAAGAA GCCGCCGCGC CGGCTGCCTC GGCCGCAGCC GCGCCCCCGC CGCCGCCCGC CAAGGTCTAC GTGGTGGGCA CCGACGCCGC CTACGCACCG TTCGAGCTGC AGAACGAGAA GGGCGAGATC GTCGGCTTCG ACATCGACGT GGTCACGGCC ATCGCGGCCA AGGCCGGCAT CGAGGTCAAG TTCGTCAACA CGCCGTGGGA AGGCATCTTC AACGCGCTCG GCCAGGGTGA CCGCGACGCG CTGGTGTCGT CGATCACGAT CACCGAGGAG CGCAAGCAGA CGATGGATTT CAGCGCGCCG TACTTCGATG CGCAGCAGCT GATCGCCGTC AAGGACACCT CCAAGGTGGC CAAGTTCGCC GACCTGAAGA AGCTCAAGGT GGGCGTGCAG ACCGGCACCA CCGGCGACGA GGTGGTGACC AAGCTGCTGG GCAAGAACAG CACCAACATC AAGCGGTTCG AGTCGACCCC GCTGGCCCTG AAAGAGCTGC AATCGGGCGG CGTCGACGCG GTGGTGGCCG ACAACGGCGT GGTGATCCAC TACGTGGCCA ACAACCCGGC CGACAAGTTC AAGACGGTGG CCGACAACAC CAGCTTCGCG CCCGAGCAGT ACGGCATCGC CGTCAAGAAG GGCAACGCCG AGCTGCTGGA GAAGATCAAC AAGGGCCTGG CCGACATCAA GGCCGACGGC ACCTACGACA AGATCTACGC GCAGTATTTC GGTGCGGCGC CGGCAGCGGC CGAGGCCGCG GCTTCGAAGT AA
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Protein sequence | MTRWTTRRFL KTAGFVAAAL VLVACGKKEE AAAPAASAAA APPPPPAKVY VVGTDAAYAP FELQNEKGEI VGFDIDVVTA IAAKAGIEVK FVNTPWEGIF NALGQGDRDA LVSSITITEE RKQTMDFSAP YFDAQQLIAV KDTSKVAKFA DLKKLKVGVQ TGTTGDEVVT KLLGKNSTNI KRFESTPLAL KELQSGGVDA VVADNGVVIH YVANNPADKF KTVADNTSFA PEQYGIAVKK GNAELLEKIN KGLADIKADG TYDKIYAQYF GAAPAAAEAA ASK
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