| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1147 |
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| Symbol | |
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| ID | 6163820 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 1228492 |
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| End bp | 1229244 |
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| Gene Length | 753 bp |
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| Protein Length | 250 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641663901 |
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| Product | polar amino acid ABC transporter, inner membrane subunit |
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| Protein accession | YP_001790181 |
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| Protein GI | 171057832 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
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| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGATCTGC GTTGGGAAAT CCTGGCCGGC TACGGCCCCT TGTTCGTCGA GGGCATCCTG
ATGACGATCA AGCTCACGCT GGTCGCGATC GGTGTCGGGC TGGCGCTGGG GGTGCTGTTC
GGGCTGATCA GCAGCTCGCG CGACGCACCC CGGCCGCGCT CGGCCGCCGC CGTGCTGGGC
ATGAAGCTGC TGCGCGGCTT CACGGTGGGC TACGTGACCT TCTTCCGGGG CACGCCGCTG
TTCGTGCAGA TCCTGCTGGT GCACTTTGCC TTGATGCCCG CGCTGATCCA CCCCGATCAC
GGCTGGCTGC TGGCCGGCGA ATCGGCGCGC ACCTTCCGCC AGGAGCACGG TGCGTTCTTC
TCGGGCTGCC TGGCGCTGAG CCTGAACGCG GGCGCCTACA TCAGCGAGAT CTTCCGCGCC
GGCATCCAGA GCATCCACCG CGGCCAGACG CAGGCGGCCT ACAGCCTGGG TTTCACGCAC
GCGCAGAGCA TGCGGTTCGT GGTGCTGCCG CAGGCCTTCC GGCGCATGGT GCCGGCGCTG
GTCAACGAGG GCGTCACGCT GATCAAGGAT TCGTCGCTGG TCTCGGCCAT CGGCCTGGCC
GAGCTGGCGC TGGCCGCGCG CACGGTGGCG GGCGCGTACT CGCGCTACTG GGAGCCGTAT
CTGGCGATCT CGCTGATCTA CCTGATCCTG ACGCTGACGC TGTCGACGCT GGCCAAGCGG
CTCGAGGCGC CGGCGCACCT GCGCGGCAAC TGA
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| Protein sequence | MDLRWEILAG YGPLFVEGIL MTIKLTLVAI GVGLALGVLF GLISSSRDAP RPRSAAAVLG
MKLLRGFTVG YVTFFRGTPL FVQILLVHFA LMPALIHPDH GWLLAGESAR TFRQEHGAFF
SGCLALSLNA GAYISEIFRA GIQSIHRGQT QAAYSLGFTH AQSMRFVVLP QAFRRMVPAL
VNEGVTLIKD SSLVSAIGLA ELALAARTVA GAYSRYWEPY LAISLIYLIL TLTLSTLAKR
LEAPAHLRGN
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