| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1146 |
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| Symbol | |
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| ID | 6163819 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 1227628 |
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| End bp | 1228488 |
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| Gene Length | 861 bp |
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| Protein Length | 286 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 641663900 |
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| Product | tyrosine recombinase XerD |
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| Protein accession | YP_001790180 |
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| Protein GI | 171057831 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | [TIGR02225] tyrosine recombinase XerD |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACGCCC TCTGGCTCGA GGACGGCCTG TCGAAGAACA CCCTCGCCGC CTACCGGCGC
GACCTGCAGG GCCTGGCTGC GGCGCTGCCC GCGCAGCAGT CGGCCGGGCT GCTGCAGGCG
AGCGAGGCGC ACCTGCTGGG CGTCATCACC GCCCGCCACG CCCAGACCCG CGCCAGCACC
GCGAACCGGC GGCTGACGGT GTTCAAGCGC TTCTACCGCT GGGCGCTGCG CGAGGCGCTG
TGCAGCGCCG ACCCCACCCT GCGCCTGAGC GCGGCGCGCC AGCCCAAGCG CCTGCCGGGC
ACGTTGAGCG AGGCCCAGGT CGAGGCGCTG CTGGCCGCGC CGGCGCTCGA CACGCCGCTG
GGCCTGCGCG ACCGCGCGAT GTTCGAGCTG ATGTACGGCG CCGGCCTGCG CGTGAGCGAG
CTGGTGTCGA TCCGCACGCT GCAGCTGGCG CTGGTCGACC AGGTGCTGAA GGTGCTCGGC
AAGGGGGCCA AGGAGCGCCT GGTGCCCTTT GGCGGCGAGG CCCGGCACTG GATCGAGCGC
TACCTGACAG AAGCCCGCCC GGCGCTATTG GCCGGGCGCA AGTGCGACGC GCTGTTCGTG
ACCGTGCGCT GCGCCGGCAT GACCCGCCAG ATGGCCTGGA ACCTGGTCAA GAAATACGCC
CGCCAGGCCG GCATCACCGT GCCGCTGTCG CCGCACACGC TGCGCCACGC CTTCGCCACC
CACCTGCTCA ACCACGGCGC CGACCTGCGC GCCGTGCAGC TGCTGCTCGG CCACGCCGAC
ATCTCGACCA CGCAGATCTA CACCCACGTG GCGCGCGAAC GGCTCAAGCA GTTGCATGCC
AGGCACCACC CGCGCGGGTG A
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| Protein sequence | MDALWLEDGL SKNTLAAYRR DLQGLAAALP AQQSAGLLQA SEAHLLGVIT ARHAQTRAST
ANRRLTVFKR FYRWALREAL CSADPTLRLS AARQPKRLPG TLSEAQVEAL LAAPALDTPL
GLRDRAMFEL MYGAGLRVSE LVSIRTLQLA LVDQVLKVLG KGAKERLVPF GGEARHWIER
YLTEARPALL AGRKCDALFV TVRCAGMTRQ MAWNLVKKYA RQAGITVPLS PHTLRHAFAT
HLLNHGADLR AVQLLLGHAD ISTTQIYTHV ARERLKQLHA RHHPRG
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