| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1142 |
|---|
| Symbol | |
|---|
| ID | 6163815 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 1223140 |
|---|
| End bp | 1224360 |
|---|
| Gene Length | 1221 bp |
|---|
| Protein Length | 406 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641663896 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001790176 |
|---|
| Protein GI | 171057827 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3748] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 44 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACACCA CCTACCTGCT CGACTGGGCC AACCTGCTGC TGCGCTGGGC CCACGTGATC
ACGGCGATCG CCTGGATCGG CTCGTCGTTC TACTTCGTCT TTCTCGACAA CAGCCTGACG
CCGCCCAGCG CGCCGGACCT GCGCGCCAAG GGCGTCGGCG GCGAGCTGTG GGCGGTGCAC
GGCGGCGGTT TCTACCACCC GCAGAAGTAC CTGGTCGCGC CCAAGGCGCT GCCCGAGAAC
CTGCACTGGT TCTACTGGGA AAGCTACAGC ACCTGGCTCA CGGGCTTCGG CCTGTTCACG
GTGCTCTACC TGTTCAACGC CGGCACCTTC CTGGTCGACA GGAGCGTGTT CGACTGGTCG
CCCGCCGCGG CCATCACGGC AGCGCTCGGT TTCCTGGCGG CGTTCTGGCT GGTCTACGAC
GGCATCTGCC GCGCCTTCGG CCAGAGGAAG AACGGCGACC TGATCGTCGG CGCCGGGGTG
TTCGCCTTCG TGGTGTTCGC CTCGTGGCTG GCCTGCCAGC TGTTCGCCGG CCGCGCGGCC
TTCCTGCTGG TGGGCGCGAT GCTGGCCACC ACGATGAGCG GCAACGTGTT CTTCTGGATC
ATCCCCGGCC AGCGCAAGGT GATCGCGCAG ATGAAGGCCG GCGTCGCGGT CGACCCGGTG
CACGGCCAGC GCGCCAAGCA GCGCAGCGTG CACAACACCT ACTTCACGCT GCCGGTGCTG
GTGGCGATGC TGTCCAACCA CTACGGCTGG CTCCATTCGG ACGAGCAGAA CTGGCTGGTG
CTGGTGCTGC TGATGCTGGC GGGCGCACTG ATCCGGCACA GCTTCGTGGC CCGCCACAAG
GCGCTGGTGC AGGGACAGCG TGCGCCCTGG CAGCACGCCA CGGTCGGCAC GCTGACGCTG
CTGGGCCTGG CGATCGGGCT GGCGCCCACG CCGTCGTCGG TGTCGCCCAA CACCGAGGCG
CGCAGCGCCG CCGCCTCGCC GGTGCGTTTT GCCGAACTGC AGGGTGTGCT CGAACAGCGC
TGCGTGATGT GCCACAACGC CCAGCTCGCC AGCAAGGGCA TCGCGCTGCA CACGCCCGCG
CTGATCGGCC GCCACGCCCA GGCGCTCTAC CAGCAGGCGG CGGTGCTCAA GCTGATGCCG
ATGAACAACG CCACCGGCAT CACCGACGCC GAACGCACGC TGATCCGGCG CTGGTTCGAC
GCCGGTGCGC CCTTGCATTG A
|
|---|
| Protein sequence | MDTTYLLDWA NLLLRWAHVI TAIAWIGSSF YFVFLDNSLT PPSAPDLRAK GVGGELWAVH
GGGFYHPQKY LVAPKALPEN LHWFYWESYS TWLTGFGLFT VLYLFNAGTF LVDRSVFDWS
PAAAITAALG FLAAFWLVYD GICRAFGQRK NGDLIVGAGV FAFVVFASWL ACQLFAGRAA
FLLVGAMLAT TMSGNVFFWI IPGQRKVIAQ MKAGVAVDPV HGQRAKQRSV HNTYFTLPVL
VAMLSNHYGW LHSDEQNWLV LVLLMLAGAL IRHSFVARHK ALVQGQRAPW QHATVGTLTL
LGLAIGLAPT PSSVSPNTEA RSAAASPVRF AELQGVLEQR CVMCHNAQLA SKGIALHTPA
LIGRHAQALY QQAAVLKLMP MNNATGITDA ERTLIRRWFD AGAPLH
|
|---|
| |