| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1134 |
|---|
| Symbol | |
|---|
| ID | 6163905 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 1214488 |
|---|
| End bp | 1215267 |
|---|
| Gene Length | 780 bp |
|---|
| Protein Length | 259 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641663888 |
|---|
| Product | hydroxypyruvate isomerase |
|---|
| Protein accession | YP_001790168 |
|---|
| Protein GI | 171057819 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3622] Hydroxypyruvate isomerase |
|---|
| TIGRFAM ID | [TIGR03234] hydroxypyruvate isomerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 0.852559 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCCGTT TTGCCGCCAA CCTCTCGATG CTGTTCACCG AGGTGCCTTT TCTCGATCGT
TTCGAACGTG CCGCGATGGC CGGGTTCGAG GCGGTGGAGT TCCTGTTTCC CTATGCCTGG
AGCGCCCACG AGATCCGTCA GAAGCTCGAT CAGAACGGGC TGAAGCCGGT GCTGTTCAAC
CTGCCACCCG GCGATTGGGA CGGCGGCGAG CGTGGCATTG CCTGCCACCC GGATCGCATT
GAAGAGTTCC GCGCCGGGGT CACGCAGGCG GTCGAATACG CCCGCGTGCT CGGTGTGCAT
CAACTGCATT GCGTGGCGGG CAAGCGCCTG GCCGGTGTCG ACGAGGCGAC GCATCGGCGC
ACCTATGTCG AGAACCTTCG GCATGCGGCA GCCGAATTGA AGAAGGCGAA CTTGCGGCTG
CTGATCGAGC CGATCAATCA TTTCGACATC CCGGGCTTCT ATCTGAACGG CACGAAGCAG
GCGATCGAGA TCCTCGATGA AGTGGGCGCC GACAACCTGC TGCTGCAGTA CGACATCTAT
CACGCCCAGC GCACCGAGGG CGAGCTGGCC GCGACGATGC AGCGGCTGCT GCCGCGCATC
GGCCACATGC AGCTGGCCGA CAACCCCGGC CGCAACGAGC CCGGCAGCGG CGAGATCAAC
TACGCCTTCC TGTTCGGCCA CATCGACCGC ATCGGCTACG ACGGCTGGAT CGGCTGCGAA
TACAAACCCG CCGGCCGGAC CGAGGACGGG CTGGGCTGGC GCCAGCGCCT GGCGCAATGA
|
|---|
| Protein sequence | MPRFAANLSM LFTEVPFLDR FERAAMAGFE AVEFLFPYAW SAHEIRQKLD QNGLKPVLFN
LPPGDWDGGE RGIACHPDRI EEFRAGVTQA VEYARVLGVH QLHCVAGKRL AGVDEATHRR
TYVENLRHAA AELKKANLRL LIEPINHFDI PGFYLNGTKQ AIEILDEVGA DNLLLQYDIY
HAQRTEGELA ATMQRLLPRI GHMQLADNPG RNEPGSGEIN YAFLFGHIDR IGYDGWIGCE
YKPAGRTEDG LGWRQRLAQ
|
|---|
| |