Gene Lcho_1133 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1133 
Symbol 
ID6163904 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp1213551 
End bp1214456 
Gene Length906 bp 
Protein Length301 aa 
Translation table11 
GC content67% 
IMG OID641663887 
Product2-hydroxy-3-oxopropionate reductase 
Protein accessionYP_001790167 
Protein GI171057818 
COG category[I] Lipid transport and metabolism 
COG ID[COG2084] 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases 
TIGRFAM ID[TIGR01505] 2-hydroxy-3-oxopropionate reductase 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value0.24797 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTTCGC AATCACTCAA GCTCGGTTTC ATCGGCCTGG GCATCATGGG CGCGCCGATG 
GCCGGCCACC TGATCCGCGC CGGCCACACG CTGTTCGTGC ACACACGCGG CAAGCTGCCG 
GCCGCGATCG TCGACAGCCC CGCGATCGCC TGCGCCAGTG CGCGCGAAGT GGCACAGCGC 
GCCGACATCA TCTTCACGAT GGTGCCCGAC ACGCCGGACG TGCAGAAGGT GCTGTTCGAC 
GAGGGCGGCG TGGCGGCTGG ATTGACCGCC GGCAAGACCG TGGTCGACAT GAGCAGCATC 
TCGCCGATCG ACACCAAAAC CTTCGCCCAG AAGATCAACG CACTCGGCTG CGACTACCTC 
GACGCGCCGG TTTCCGGCGG CGAGGTGGGC GCGAAGAACG CCACGCTGTC GATCATGGTG 
GGTGGCGACG AGGCGGTGTT CGAGCGCGTC AGGCCGCTGT TCGAGCTGAT GGGCAAGAAC 
ATCACGCTCG TGGGCGGCAA TGGCGACGGC CAGACCGCCA AGGTGGCGAA TCAGATCATC 
GTGGCGCTCA ACATCGAGGC GGTGGCCGAG GCGCTGCTGT TCGCGGCCAA GGCGGGCGCC 
GATCCGGCGC GGGTGCGGCA GGCGCTGATG GGCGGCTTCG CGTCGAGCCG GATCCTCGAG 
GTGCACGGCG AGCGCATGGT CAAGCGCACG TTTGCGCCGG GCTTTCGCAT CGAGCTGCAT 
CAGAAGGACC TCAACCTGGC GCTGGCCAGC GCGCGCTCGC TCGGTGTCAG CCTGCCCAAC 
ACGGCCACCG CGCAGGAGCT GTTCAATTCA TGTGCCGCAC ATGGTGGCAA GGGCTGGGAC 
CACTCGGCAA TGGTGCGGGC TTTGGAGACA ATGGCCCACT TCGAGATCGG CCAGCAGCCC 
GGCTGA
 
Protein sequence
MTSQSLKLGF IGLGIMGAPM AGHLIRAGHT LFVHTRGKLP AAIVDSPAIA CASAREVAQR 
ADIIFTMVPD TPDVQKVLFD EGGVAAGLTA GKTVVDMSSI SPIDTKTFAQ KINALGCDYL 
DAPVSGGEVG AKNATLSIMV GGDEAVFERV RPLFELMGKN ITLVGGNGDG QTAKVANQII 
VALNIEAVAE ALLFAAKAGA DPARVRQALM GGFASSRILE VHGERMVKRT FAPGFRIELH 
QKDLNLALAS ARSLGVSLPN TATAQELFNS CAAHGGKGWD HSAMVRALET MAHFEIGQQP 
G