Gene Lcho_1130 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1130 
Symbol 
ID6163901 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp1210591 
End bp1211073 
Gene Length483 bp 
Protein Length160 aa 
Translation table11 
GC content73% 
IMG OID641663884 
Producthypothetical protein 
Protein accessionYP_001790164 
Protein GI171057815 
COG category[R] General function prediction only 
COG ID[COG0802] Predicted ATPase or kinase 
TIGRFAM ID[TIGR00150] ATPase, YjeE family 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value0.30959 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGATTCTAG AAACGCTGTC CCTGCACTGG CCCGACGAGG CGGCCTGCGC CGCCACCGCC 
GCCCGCCTGG CGCGCCACCC CGGCCTGCGC CGCGCCTGCA TCGAGCTGCA CGGCCCGCTG 
GGTGCGGGCA AGACCACGCT GGTGCGCCAC CTGCTGCGCG CGCTGGGCGT GAGCGGGCGC 
ATCAAGAGCC CGAGCTACGC GATCGTCGAG CCCTACGAGC TGCCCGCCGG TGAGTCGGGC 
GAGGCCGGCG CGGCGTGGCA CTTCGACTTC TACCGTTTCG GCGATCCGCT CGAATGGGAG 
GACGCCGGCC TGCGCGATCT CTTTGCCAGC CCCGGGCTCA AGCTGGTGGA ATGGCCCGAG 
CGGGTGGCCG GCCTGTTGCC CGCCGCCGAC CTGCGCATCA TCATCGAGCC GCAACTCGAC 
GCCGGCCGGC AGGTGCAGCT GCAGCCCGGC ACCGCGCTCG GCCGCGAGCT GATCTCCGAT 
TGA
 
Protein sequence
MILETLSLHW PDEAACAATA ARLARHPGLR RACIELHGPL GAGKTTLVRH LLRALGVSGR 
IKSPSYAIVE PYELPAGESG EAGAAWHFDF YRFGDPLEWE DAGLRDLFAS PGLKLVEWPE 
RVAGLLPAAD LRIIIEPQLD AGRQVQLQPG TALGRELISD