Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_1129 |
Symbol | |
ID | 6163743 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 1208991 |
End bp | 1210562 |
Gene Length | 1572 bp |
Protein Length | 523 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 641663883 |
Product | N-acetylmuramoyl-L-alanine amidase |
Protein accession | YP_001790163 |
Protein GI | 171057814 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0860] N-acetylmuramoyl-L-alanine amidase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 0.418715 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGTACG ACGCGACGCG CCACGGGCAC TTGCCGGCCC CTCTGTCGAC CCCGCCCACC GATGATCTGC CCGCCATGCA TCGGCGCGGC TGGTTCCGCC AGGCCGGCGC CTGGGTGCTG ATGCTCGGCG CGCCCGATCT GGTGCGCGGC GCCAACCTGG TGGCGGTGCG GGTCTGGCCG GCGGCCGACT ACACGCGGGT GACGATCGAA TCCGACCAGG CGCTGGTGAC GCGCCATTTC GCGATCGACC AGCCGCCGCG GCTGGCGATC GACATCGACG ACCTCGAGCT CAGCCCGCAG CTGCGCGACC TGGTCGCCAA GGTCGGCAAC CACGACCCGC ACATCGAGAA GGTGCGGCTG GGCCAGAGCG AGCCGCGCAA GGTGCGCATG GTGTTCGACC TGAAGAGCCC GAGCGAGCCG CAGGTGTTCA CGCTGGCGCC GATCCCGCCG TACCGGCACC GGCTGGTGTT CGACCTGCGC CCGAGCAAGC CGCCCGATCC GCTGCTGCTG CTGGTGCGCG AACGCGAGAC GGCGCTCGGC AACGCCAGCC AGGCGGCCAA CCACGAGGCC GAGCAGGCCG CGTCCGACGT CGACGACGCG CTGGGCGAAT TCATCGGCCG CATCGACTCG CCCGGCGCCA CGCCGCCGCC CGCGCTGCCG GGTCAGCCCG GCGACGGCCC GGCCGTGGCC AGGACGCCCG AGGCGGTCGA GCCCGACCGG CCCGCCTGGC CGCCGGCCTC GGCGCCGACA CCCGGGCCGG CGCAAGCCCC GGTTCCTGCG ACCGCATCGG CGCCGCCGTC GGCACCCGCC GCGCCGGTGC GCCCGCCGGC CGTGCCACCG GGCCGTGCCG GCATCAACCG GCTGGTGATC GTGGCGATCG ATCCCGGCCA CGGCGGCGAG GACCCGGGCG CGATCGGGCC GAGCGGGCTG CGCGAGAAGG ACGTCGTGCT GCAGATCGCC AGGCAGCTGC ACGACCTGAT CAACACCCGC CCCGGCATGC GCGCGATGCT GACGCGCGAC GCCGACTTCT TCGTGCCGCT GCAGGACCGC GTGCGCAAGG CGCAGCGGGT GCAGGCCGAC CTGTTCATCT CGGTGCACGC CGACGCCTTC ATGCTGCCGC GCGCGCGTGG TGCGTCGGTG TTCGCGCTGT CCGAGCGCAG CGCCAGCAGC GCCGCGGCAC GCTGGATGGC GCAGCGCGAG AACCGCGCCG ACGCGATCGG CGGCATCAAC ATCAACGTCA AGGCCAACGA CCGCCACGTG CTGCGCGCGC TGTTCGACAT GAGCACCAGC GCGCAGATCA AGGACAGCCT GCGCATCGGC CGCGAGGTGC TGGGCCACAT CGGCCAGGTC GGCAAGCTGC ACAAGAACCA TGTCGAGCAG GCCGGCTTCG CGGTGCTGAA GGCGCCCGAC ATCCCGTCGA TCCTGGTCGA GACCGGCTTC ATCACCAATC CCGAGGAAGA ACGCCAGTTG CGCAGCCCGG CCTACCAGGC GCGTCTGGTC AAGGCGCTCT ACACCGGCGT CGTGCGCTAT TTCGCGCGCA ACCCGCCGCT GGCGCGCAAC CGCATGCTCT GA
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Protein sequence | MKYDATRHGH LPAPLSTPPT DDLPAMHRRG WFRQAGAWVL MLGAPDLVRG ANLVAVRVWP AADYTRVTIE SDQALVTRHF AIDQPPRLAI DIDDLELSPQ LRDLVAKVGN HDPHIEKVRL GQSEPRKVRM VFDLKSPSEP QVFTLAPIPP YRHRLVFDLR PSKPPDPLLL LVRERETALG NASQAANHEA EQAASDVDDA LGEFIGRIDS PGATPPPALP GQPGDGPAVA RTPEAVEPDR PAWPPASAPT PGPAQAPVPA TASAPPSAPA APVRPPAVPP GRAGINRLVI VAIDPGHGGE DPGAIGPSGL REKDVVLQIA RQLHDLINTR PGMRAMLTRD ADFFVPLQDR VRKAQRVQAD LFISVHADAF MLPRARGASV FALSERSASS AAARWMAQRE NRADAIGGIN INVKANDRHV LRALFDMSTS AQIKDSLRIG REVLGHIGQV GKLHKNHVEQ AGFAVLKAPD IPSILVETGF ITNPEEERQL RSPAYQARLV KALYTGVVRY FARNPPLARN RML
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