| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1129 |
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| Symbol | |
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| ID | 6163743 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 1208991 |
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| End bp | 1210562 |
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| Gene Length | 1572 bp |
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| Protein Length | 523 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 641663883 |
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| Product | N-acetylmuramoyl-L-alanine amidase |
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| Protein accession | YP_001790163 |
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| Protein GI | 171057814 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0860] N-acetylmuramoyl-L-alanine amidase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 0.418715 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGTACG ACGCGACGCG CCACGGGCAC TTGCCGGCCC CTCTGTCGAC CCCGCCCACC
GATGATCTGC CCGCCATGCA TCGGCGCGGC TGGTTCCGCC AGGCCGGCGC CTGGGTGCTG
ATGCTCGGCG CGCCCGATCT GGTGCGCGGC GCCAACCTGG TGGCGGTGCG GGTCTGGCCG
GCGGCCGACT ACACGCGGGT GACGATCGAA TCCGACCAGG CGCTGGTGAC GCGCCATTTC
GCGATCGACC AGCCGCCGCG GCTGGCGATC GACATCGACG ACCTCGAGCT CAGCCCGCAG
CTGCGCGACC TGGTCGCCAA GGTCGGCAAC CACGACCCGC ACATCGAGAA GGTGCGGCTG
GGCCAGAGCG AGCCGCGCAA GGTGCGCATG GTGTTCGACC TGAAGAGCCC GAGCGAGCCG
CAGGTGTTCA CGCTGGCGCC GATCCCGCCG TACCGGCACC GGCTGGTGTT CGACCTGCGC
CCGAGCAAGC CGCCCGATCC GCTGCTGCTG CTGGTGCGCG AACGCGAGAC GGCGCTCGGC
AACGCCAGCC AGGCGGCCAA CCACGAGGCC GAGCAGGCCG CGTCCGACGT CGACGACGCG
CTGGGCGAAT TCATCGGCCG CATCGACTCG CCCGGCGCCA CGCCGCCGCC CGCGCTGCCG
GGTCAGCCCG GCGACGGCCC GGCCGTGGCC AGGACGCCCG AGGCGGTCGA GCCCGACCGG
CCCGCCTGGC CGCCGGCCTC GGCGCCGACA CCCGGGCCGG CGCAAGCCCC GGTTCCTGCG
ACCGCATCGG CGCCGCCGTC GGCACCCGCC GCGCCGGTGC GCCCGCCGGC CGTGCCACCG
GGCCGTGCCG GCATCAACCG GCTGGTGATC GTGGCGATCG ATCCCGGCCA CGGCGGCGAG
GACCCGGGCG CGATCGGGCC GAGCGGGCTG CGCGAGAAGG ACGTCGTGCT GCAGATCGCC
AGGCAGCTGC ACGACCTGAT CAACACCCGC CCCGGCATGC GCGCGATGCT GACGCGCGAC
GCCGACTTCT TCGTGCCGCT GCAGGACCGC GTGCGCAAGG CGCAGCGGGT GCAGGCCGAC
CTGTTCATCT CGGTGCACGC CGACGCCTTC ATGCTGCCGC GCGCGCGTGG TGCGTCGGTG
TTCGCGCTGT CCGAGCGCAG CGCCAGCAGC GCCGCGGCAC GCTGGATGGC GCAGCGCGAG
AACCGCGCCG ACGCGATCGG CGGCATCAAC ATCAACGTCA AGGCCAACGA CCGCCACGTG
CTGCGCGCGC TGTTCGACAT GAGCACCAGC GCGCAGATCA AGGACAGCCT GCGCATCGGC
CGCGAGGTGC TGGGCCACAT CGGCCAGGTC GGCAAGCTGC ACAAGAACCA TGTCGAGCAG
GCCGGCTTCG CGGTGCTGAA GGCGCCCGAC ATCCCGTCGA TCCTGGTCGA GACCGGCTTC
ATCACCAATC CCGAGGAAGA ACGCCAGTTG CGCAGCCCGG CCTACCAGGC GCGTCTGGTC
AAGGCGCTCT ACACCGGCGT CGTGCGCTAT TTCGCGCGCA ACCCGCCGCT GGCGCGCAAC
CGCATGCTCT GA
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| Protein sequence | MKYDATRHGH LPAPLSTPPT DDLPAMHRRG WFRQAGAWVL MLGAPDLVRG ANLVAVRVWP
AADYTRVTIE SDQALVTRHF AIDQPPRLAI DIDDLELSPQ LRDLVAKVGN HDPHIEKVRL
GQSEPRKVRM VFDLKSPSEP QVFTLAPIPP YRHRLVFDLR PSKPPDPLLL LVRERETALG
NASQAANHEA EQAASDVDDA LGEFIGRIDS PGATPPPALP GQPGDGPAVA RTPEAVEPDR
PAWPPASAPT PGPAQAPVPA TASAPPSAPA APVRPPAVPP GRAGINRLVI VAIDPGHGGE
DPGAIGPSGL REKDVVLQIA RQLHDLINTR PGMRAMLTRD ADFFVPLQDR VRKAQRVQAD
LFISVHADAF MLPRARGASV FALSERSASS AAARWMAQRE NRADAIGGIN INVKANDRHV
LRALFDMSTS AQIKDSLRIG REVLGHIGQV GKLHKNHVEQ AGFAVLKAPD IPSILVETGF
ITNPEEERQL RSPAYQARLV KALYTGVVRY FARNPPLARN RML
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