Gene Lcho_1127 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1127 
Symbol 
ID6163741 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp1206764 
End bp1207423 
Gene Length660 bp 
Protein Length219 aa 
Translation table11 
GC content65% 
IMG OID641663881 
ProductSNARE associated Golgi protein 
Protein accessionYP_001790161 
Protein GI171057812 
COG category[S] Function unknown 
COG ID[COG0586] Uncharacterized membrane-associated protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value0.325402 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAATGGA TAACCCTCTT GATCGACTTC GTGCTGCACG TCGACCAGCA CCTCAACCAG 
TTCGTGACCG ATCACGGCGC CTGGATCTAT GTCTTGCTGT TCGCGATCAT CTTCGTCGAG 
ACCGGCCTGG TGGTGATGCC GTTCCTGCCG GGCGACTCGC TGCTGTTCGT GGTCGGCACG 
ATGTGCGGCC TGGGCCTGCT GAGCCTGCCG CTGACCATCG CGCTGCTGCT GGTGGCGGCG 
ATCCTGGGCG ACCAGCTCAA CTACAGCATC GGCCAGCGCC TGGGGCCGCG GGTGTTCCAG 
TGGGAGCAGT CGCGCTTCTT CAACAAGCGC GCCTTCCTGC AGGCGCACGC GTTCTACGAG 
CGCTACGGCG GCATCACGAT CGTGCTGGCG CGCTTCATGC CGTTCATCCG CACCTTCGCG 
CCCTTCGTGG CCGGCGTGGC AGCGATGTCC CGGCTGCGTT TCGCGATGTA CAACTGCATC 
GGCGCGCTGC TGTGGGTGGT GGGCATCACG GTCGCCGGCT ACCTGTTCGG CAACGTGCCG 
TGGGTGAAGA TGAACCTCGA GAAGATCATC TGGGCGCTGC TGATCGTGCC CGGCCTGCTG 
GCGATCTTCG GCGCCTGGCG CGCCCGCAAG CGCGAAAGCA GCCCGGTCGG CCAGACCTGA
 
Protein sequence
MEWITLLIDF VLHVDQHLNQ FVTDHGAWIY VLLFAIIFVE TGLVVMPFLP GDSLLFVVGT 
MCGLGLLSLP LTIALLLVAA ILGDQLNYSI GQRLGPRVFQ WEQSRFFNKR AFLQAHAFYE 
RYGGITIVLA RFMPFIRTFA PFVAGVAAMS RLRFAMYNCI GALLWVVGIT VAGYLFGNVP 
WVKMNLEKII WALLIVPGLL AIFGAWRARK RESSPVGQT