| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1118 |
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| Symbol | |
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| ID | 6162140 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 1193738 |
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| End bp | 1195072 |
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| Gene Length | 1335 bp |
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| Protein Length | 444 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641663872 |
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| Product | glucarate dehydratase |
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| Protein accession | YP_001790152 |
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| Protein GI | 171057803 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[R] General function prediction only |
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| COG ID | [COG4948] L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily |
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| TIGRFAM ID | [TIGR03247] glucarate dehydratase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 0.958385 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTTCCA ACGCTACCCC CGTCGTCGTG GCCCTGCGTG TCGTGCCGGT GGCCGGCCGC
GACAGCATGC TGCTCAACCT GAGCGGTGCG CACGCGCCGT ACTTCACCCG CAACCTGCTG
ATCCTGACCG ACAGCGCCGG CCGCACCGGC GTGGGCGAGG TGCCGGGCGG CGAGCCGATC
CGGCGCACGC TCGAAGACGC CGCCGCGCTG GTGGTGGGCG CCAAGGTGGG CGACTGGCAG
CGCGTGCTCA ACGCCGTGCG CACGCAGTTC GCCGACCGCG ATTCGGGCGG GCGCGGCCTG
CAGACCTTCG ACCTGCGCAC CACGATCCAC GCGGTCACCG CGGTCGAGTC GGCGCTGCTC
GACCTGCTCG GCCAGCACCT CGAGGTGCCG GTGTGCGCGC TGCTCGGCGA AGGCCAGCAG
CGCGACAGCG TGCCGATGCT CGGCTACCTG TTCTACATCG GCGACCGCAA CAAGACCGAT
CTGCCGTACG ACAGCGCGCC CGACGCTGCC GACCCCTGGC TGCGCCTGCG CCACGAGGAG
GCGATGACAC CCGACGCGGT GGTCGCACTG GCCGAAGCCG CGCAGGCGCG CTACGGTTTC
CACGACTTCA AGCTCAAGGG CGGCGTGCTG CGCGGCGAGG AAGAGGTCGA GGCGATCCGC
GCGCTGAAAG CGCGTTTCCC GCAGGCCCGC ATCACGCTCG ACCCCAACGG CGGCTGGTTG
CTCAAGGACG CGACCCGCCT GATGCGCGAC ATGCACGGCG TGCTCGCCTA CGCCGAAGAC
CCGTGCGGTG CCGAGGGCGG CTTCTCGGGC CGCGAGGTGA TGGCCGAGTT CCGCCGCGCT
ACCGGCCTGC CGACCGCCAC CAACATGGTC GCCACCGACT GGCGCCAGAT GGTGCATTCG
CTGAGCCTGC AGAGCGTCGA CATCCCGCTC GCCGACCCGC ATTTCTGGAC CATGCAAGGT
GCGGTGCGGG TGGCGCAGAC CTGCCGCGAT TTCGGCCTGA CCTGGGGTTC GCACTCCAAC
AACCACTTCG ACGTGTCGCT GGCGATGTTC ACGCAGGCCG CGGCTGCTGC GCCGGGGCGT
GTCACCGCGA TCGACACCCA CTGGATCTGG CAGGACGGCC AGAACCTGAC GCAAAAACCG
CTGCAGATCG TCGACGGCGA AGTGGCCGTG CCGACCGTGC CGGGCCTGGG CGTCGAGCTC
GACATGGACG CGGTCGAGGC CGCGCACCAG CTCTACCTGC AGCACGGCCT GGGCTCGCGC
GACGACGCCA CGGCGATGCA GTACCTGATC CCGAACTGGA CCTTCGACCC CAAGCGCCCG
TGCCTGGTGC GCTGA
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| Protein sequence | MSSNATPVVV ALRVVPVAGR DSMLLNLSGA HAPYFTRNLL ILTDSAGRTG VGEVPGGEPI
RRTLEDAAAL VVGAKVGDWQ RVLNAVRTQF ADRDSGGRGL QTFDLRTTIH AVTAVESALL
DLLGQHLEVP VCALLGEGQQ RDSVPMLGYL FYIGDRNKTD LPYDSAPDAA DPWLRLRHEE
AMTPDAVVAL AEAAQARYGF HDFKLKGGVL RGEEEVEAIR ALKARFPQAR ITLDPNGGWL
LKDATRLMRD MHGVLAYAED PCGAEGGFSG REVMAEFRRA TGLPTATNMV ATDWRQMVHS
LSLQSVDIPL ADPHFWTMQG AVRVAQTCRD FGLTWGSHSN NHFDVSLAMF TQAAAAAPGR
VTAIDTHWIW QDGQNLTQKP LQIVDGEVAV PTVPGLGVEL DMDAVEAAHQ LYLQHGLGSR
DDATAMQYLI PNWTFDPKRP CLVR
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