| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1117 |
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| Symbol | |
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| ID | 6162299 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 1192774 |
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| End bp | 1193685 |
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| Gene Length | 912 bp |
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| Protein Length | 303 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641663871 |
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| Product | 5-dehydro-4-deoxyglucarate dehydratase |
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| Protein accession | YP_001790151 |
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| Protein GI | 171057802 |
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| COG category | [E] Amino acid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0329] Dihydrodipicolinate synthase/N-acetylneuraminate lyase |
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| TIGRFAM ID | [TIGR03249] 5-dehydro-4-deoxyglucarate dehydratase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCCCCC AAGAGCTCAA GAACGTCCTG CAATCCGGCC TGCTGTCGTT CCCGCTGACC
GACTTCGACC GCGAACTGAA TTTCGCGCCC AAGCCCTATG CGGAACGCCT CAAGTGGCTG
CAGCCCTACG GCGCCAGCGC GCTGTTCGCG GCCGGCGGCA CGGGCGAGTT CTTCTCGCTG
GAGCCGGGCG AATACAGCGA CGTCATCAAG GTGGCGCTCG ACACCTGCCG CGGCCGCACC
CCGATCATTG CCGGCGCCGG TGGCGGCACC CGCGTCGCGA TCCAGTACGC GCAGGAGGCC
GAGCGCCTGG GTGCGCAGGG CGTGCTGCTG CTGCCGCACT ACCTGACCGA AGCCAGCCAG
GAAGGCCTGA TCGCCCACGT GCAGGCGGTC TGCCGCAGCG TCAGGTTCGG CGTCACGGTC
TACAACCGCG GCGCCTGCAA GCTCACGCCC GCCAGCCTGC TGGTGCTGGC CGAGACCTGC
CCGAACCTGA TCGGCTTCAA GGACGGCATC GGCGACATCG AGACCTTCGT GTCGATCCGC
CAGACCCTGG GCGAGCGCTT CGCCTATCTC GGCGGCCTGC CCACGGCCGA GGTGTTTGCC
GGCGCCTACA AGGCGATGGG CTGCCCGGTG TACTCGTCGG CGGTGTTCAA TTTCATCCCC
AAGACGGCGA TGGAGTTCTA CAACGCGCAC GCGGCCGGTG ACAGCGCCAC CTGCGACCGC
CTGATCCGCG ATTTTTTCCT GCCCTACATC GCGCTGCGCA ACAAGAACCA CGGTTACGCG
GTGTCGATCG TGAAGGCCGG TGCCACCCTG ATCGGCCACG GCGCCGGCCC GGTGCGCCCG
CCGCTGAGCG ACCTGAAGCC GGCCGAGGTG GCCGAACTGG CGGCGCTGAT GGCCAAGCTC
GGGCCGCAGT AA
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| Protein sequence | MSPQELKNVL QSGLLSFPLT DFDRELNFAP KPYAERLKWL QPYGASALFA AGGTGEFFSL
EPGEYSDVIK VALDTCRGRT PIIAGAGGGT RVAIQYAQEA ERLGAQGVLL LPHYLTEASQ
EGLIAHVQAV CRSVRFGVTV YNRGACKLTP ASLLVLAETC PNLIGFKDGI GDIETFVSIR
QTLGERFAYL GGLPTAEVFA GAYKAMGCPV YSSAVFNFIP KTAMEFYNAH AAGDSATCDR
LIRDFFLPYI ALRNKNHGYA VSIVKAGATL IGHGAGPVRP PLSDLKPAEV AELAALMAKL
GPQ
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