Gene Lcho_1113 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1113 
Symbol 
ID6162295 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp1189247 
End bp1189798 
Gene Length552 bp 
Protein Length183 aa 
Translation table11 
GC content67% 
IMG OID641663867 
Producttripartite ATP-independent periplasmic transporter DctQ 
Protein accessionYP_001790147 
Protein GI171057798 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG3090] TRAP-type C4-dicarboxylate transport system, small permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value0.296573 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACCCGC TCTACATCCG TTTGATGGAT CGCTTCTACC TGGCCAGCAT CTGGCTGGCC 
GGCGCCGCGA TCTTCTTCAT GTCGCTGATC ATCCCGTGGG GCGTGTTCAC GCGCTACGTG 
CTGGGCACCG GCTCGCAGTG GCCCGAGCCG ATCGCGATCC TGCTGATGAT GGTGTTCACC 
TTCATCGGCG CGGCCGCCGC CTACCGCGCC AACGCCCACA TCGCCGTGAC GATGCTGACC 
GACGTGCTGC CCGCGCCGCT GCGCAAGCTC TCGGCCCGGG TGGTCGACCT GCTGATGCTG 
CTGGCCTGCC TGTTCGTCAC CTTCTACGGC GCCCGGCTGT GCCTGGAGAC GATGGGCCAG 
TCGCTGGCCG AACTGCCCTG GCTGCCGGTG GGCGTGACCT ACGCGTCGCT GCCGATCGGC 
GCGGCCGTCA CCATCCTGTT CGTGCTCGAA CGCATGTTCT ACGGCACCCA GAACCATCGC 
CCGCTGGTGC GCTACGAAGA AGGCGACGCA AGCGACGCCA CCGATACACC GACCACCGAG 
GGAGCCCGCT GA
 
Protein sequence
MDPLYIRLMD RFYLASIWLA GAAIFFMSLI IPWGVFTRYV LGTGSQWPEP IAILLMMVFT 
FIGAAAAYRA NAHIAVTMLT DVLPAPLRKL SARVVDLLML LACLFVTFYG ARLCLETMGQ 
SLAELPWLPV GVTYASLPIG AAVTILFVLE RMFYGTQNHR PLVRYEEGDA SDATDTPTTE 
GAR