| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1112 |
|---|
| Symbol | |
|---|
| ID | 6162294 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 1187964 |
|---|
| End bp | 1189247 |
|---|
| Gene Length | 1284 bp |
|---|
| Protein Length | 427 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641663866 |
|---|
| Product | TRAP dicarboxylate transporter, DctM subunit |
|---|
| Protein accession | YP_001790146 |
|---|
| Protein GI | 171057797 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
|---|
| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.192986 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATGCTT TCGTGCTGAT CGGCAGCTTC GTGCTGCTGA TGATGATCGG CGTGCCGATC
GCCTTTTCGC TCGGCCTGGC CGCCCTGATC GGCGCGCTGT GGATCGACAT CCCGCTCGAC
GCGGTGATGA TCCAGATCGC CGCCGGGGTC AACAAGTTCT CGCTGCTGGC GATCCCGTTC
TTCGTGCTGG CCGGCGCCAT CATGGCCGAG GGCGGCATGG CGCGCCGGCT GGTGGCGTTT
GCCGGCGTGC TGGTGGGTTT CATCCGCGGC GGGTTGTCGC TGGTCAACAT CCTGGCCAGC
ACCTTCTTCG GCGCGATCTC GGGCTCGTCG GTGGCCGACA CCGCCTCGGT CGGCACGGTG
CTGATCCCCG AGATGGAGAA GAAGGGCTAC CCGCGCGACT TCGCCACCGC GGTCACCATC
AGCGGCTCGG TGCAGGCGAT CCTGATCCCG CCCAGCCACA ACGCCGTGCT GTACTCGCTG
GCCGCAGGCG GCTCGGTGTC GATCGCCGCG CTGTTCATGG CCGGCGTGCT GCCGGGCCTG
CTGATGGGCC TGACGCTGGC CGTGCTGTGC CTGATGAAGG CCAGGAAACA CGGCTACCCC
AAGGGCGAGG TGATCCCGCT CAAGCAGGCG ATCAAGATCT CGATCGACGC GATGTGGGGC
CTGATGACGA TGGTCATCAT CCTCGGCGGC ATCCTGTCGG GCGTGTTCAC GGCCAACGAA
TCGGCTTCGA TCGCGGTGGT CTGGGCCTTC TTCGTCACGA TGTTCATCTA CCGCGACTAC
AAGTGGCGCG ACCTGCCCAA GCTGGTGCAC CGCACCGTCA AGACGGTGAC GATCGTGATG
ATCCTGATCG GCTTCGCGGC GGCCTTCGGC TACCTGATGA CGCTGATGAT GATCCCGCTG
CGAGTCACCG CCTTCCTCAC CAGCCTGTCG GACAACAAGT ACGCGATCCT GGCCATGATC
AACATACTGC TGCTGGTGCT GGGCACGCTG ATGGACATGT CGCCGCTGAT CCTGATCCTC
ACGCCGATCC TGCTGCCGGT GGTCAAGATG CTGGGTGTCG ACCCGGTGCA CTTCGGCATG
ATCATGATGG TCAACCTCGG CATCGGCCTG ATCACGCCGC CGGTGGGCAC GGTGCTGTTC
GTCGGCGCAG CGGTGGCCAA GCTCAAGATC GGCGTGGTCA CCCGGGCGAT GATGCCGTTC
TTCGTCGCGC TGTTCATCGT GCTGCTGATG GTGACCTACA TCCCCTGGCT GTCGCTGTGG
CTGCCGCGTT TCCTGGGTCT TTGA
|
|---|
| Protein sequence | MDAFVLIGSF VLLMMIGVPI AFSLGLAALI GALWIDIPLD AVMIQIAAGV NKFSLLAIPF
FVLAGAIMAE GGMARRLVAF AGVLVGFIRG GLSLVNILAS TFFGAISGSS VADTASVGTV
LIPEMEKKGY PRDFATAVTI SGSVQAILIP PSHNAVLYSL AAGGSVSIAA LFMAGVLPGL
LMGLTLAVLC LMKARKHGYP KGEVIPLKQA IKISIDAMWG LMTMVIILGG ILSGVFTANE
SASIAVVWAF FVTMFIYRDY KWRDLPKLVH RTVKTVTIVM ILIGFAAAFG YLMTLMMIPL
RVTAFLTSLS DNKYAILAMI NILLLVLGTL MDMSPLILIL TPILLPVVKM LGVDPVHFGM
IMMVNLGIGL ITPPVGTVLF VGAAVAKLKI GVVTRAMMPF FVALFIVLLM VTYIPWLSLW
LPRFLGL
|
|---|
| |