| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1111 |
|---|
| Symbol | |
|---|
| ID | 6161312 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 1186986 |
|---|
| End bp | 1187960 |
|---|
| Gene Length | 975 bp |
|---|
| Protein Length | 324 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641663865 |
|---|
| Product | gluconolactonase |
|---|
| Protein accession | YP_001790145 |
|---|
| Protein GI | 171057796 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3386] Gluconolactonase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.0894988 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACACCA CCGGTCCGCA ACTCCCCTTC GCGCCCAGCC AGCGTTATCC CGATCCGGCC
ATCGAACTGC TCGACCCGAG CTTCGCCCGC TATCGCCTCT TCAGCGGCGG CGTCGAGCAG
CTCGCCAGCG GCCTGCGCTG GGCCGAGGGG CCGGTGTGGT TCGGCGATGG CCGCTACCTG
CTGGTCAGCG ACATCCCGAA CAACCGCATC CTGCGCTGGG ACGACTGCTC GGGCGCGCTC
AGCGTGTTCC GCGCGCCGGC CGACAACGCC AACGGCCACG CACGCGACCG CCAGGGCCGC
TTGCTGACCT GCGAGCACCT GACCCGGCGC GTGACCCGCA CCGAGTACGA CGGCCGCATC
ACGGTGCTGG CCGATACATA CGACGGCAAG CGCCTCAATT CGCCCAACGA CATCACCTGC
CGCAGCGACG GCAGCGTCTG GTTCACCGAC CCGAGCTTCG GCATCGAGAG CGACTGGGAG
GGCGAAACCG CGCCGCAGGA ACTGCCGCAT GCGGTCTACC GCATCGACGG CGCGAGCGGC
CGGCTCGACG CCGTGATCAC CGACCTGAAC GCGCCCAACG GCCTGTGTTT TTCGCCCGAC
GAACGCACGC TGTACGTGAT CGAGAGCCGC GCCAACCCGC GCCGCATCTG GGCTTATGAC
GTGGATGCGG CCGGCGCCCT GTCGAACAAG CGCAGCCACG TCGAGGCCAC CGACCACGGC
GCGCTCGACG GCATGGCCTG CGACCGCGAC GGCAACCTCT GGTGCGGCTA CGGCAGCAAC
GGCTCGGCGC AGTCGGTGGG CGAGGTGCTC GACGGGGTGC GCGTGTTCAA CCCCGCCGGC
AAAGCCATCG GCCACATCCA CCTGCCCGAA CGCTGCGCCA ACGTGTGCTT CGGCGGCGCC
AAGAACAACC GCCTGTTCAT GGCCAGCAGC CACTCGCTCT ACGCCGTCTA CGTCAACACC
GCCGGCGCGC TGTGA
|
|---|
| Protein sequence | MNTTGPQLPF APSQRYPDPA IELLDPSFAR YRLFSGGVEQ LASGLRWAEG PVWFGDGRYL
LVSDIPNNRI LRWDDCSGAL SVFRAPADNA NGHARDRQGR LLTCEHLTRR VTRTEYDGRI
TVLADTYDGK RLNSPNDITC RSDGSVWFTD PSFGIESDWE GETAPQELPH AVYRIDGASG
RLDAVITDLN APNGLCFSPD ERTLYVIESR ANPRRIWAYD VDAAGALSNK RSHVEATDHG
ALDGMACDRD GNLWCGYGSN GSAQSVGEVL DGVRVFNPAG KAIGHIHLPE RCANVCFGGA
KNNRLFMASS HSLYAVYVNT AGAL
|
|---|
| |