| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1107 |
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| Symbol | |
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| ID | 6161308 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 1182931 |
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| End bp | 1184439 |
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| Gene Length | 1509 bp |
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| Protein Length | 502 aa |
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| Translation table | 11 |
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| GC content | 75% |
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| IMG OID | 641663861 |
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| Product | AraC family transcriptional regulator |
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| Protein accession | YP_001790141 |
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| Protein GI | 171057792 |
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| COG category | [F] Nucleotide transport and metabolism
[L] Replication, recombination and repair |
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| COG ID | [COG0122] 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase
[COG2169] Adenosine deaminase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.0739915 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCGTTT GCATGCCGAG CCGATCCGCC CCCCTCGCCA GCACCGACGC GACCGCGCAT
GCCGCCTGTT ATGCGGCGCT GGTGGCGCGC GATCGGCGCT TCGACGGGCG CTTCTTCGTC
GGCGTCACCT CCACCGGCAT CTACTGCCGG CCGGTCTGCG GCGTGCGCAC GCCCAAGGCC
GCGAACTGCC GTTTCTTCGA CAACGCCGCC GCCGCCGAGG CGGGTGGATT CAGGCCCTGC
CTGCGCTGCC GGCCGGAACT GGCGCCGGGG CTCGCGGGCA TCGACATGCC CTCGCGCCTG
GCCTGGGCTG CGGCCCAGCG CATCGAGGCC GGCGCGCTCG ACGATGGCGG GCTGACCGGC
CTGTCGGCGC GGCTGGGCAT CACCGACCGC CACCTGCGCC GCATCTTCAT GGCCGCCTTC
GGCGTCACGC CGATCGACTA CGCCCAGACC CAGCGGCTGC TGATCGCCAA GCGCCTGCTG
GCCGACACCA CGCTGCCGGT CACCGAGGTG GCGCTGGCGG CGGGCTTCGG CAGCCTGCGG
CGCTTCAATC ACCTGTTTCA AAGCCGCTAC CGGCTCACGC CGGGTGAACT GCGGCGCGCC
AGCGGCCCGG CTGCGCGCGA GGGCGGGCTG CACTTCGAGC TGGCGTTCCG CCCGCCGCTC
GATTGGCCGC GGCTGCTGGC CTTCCTGGCG GCGCGCTGCG TGGCCGGTGT CGAGGCGGTG
GCCGACGGCA CCTATCGGCG CAGCGTGCGG CTGCACGCCG GCGGCAGCGA GCACACCGGC
TGGCTGGCGC TCGGCCTGGC CGCGCACGGC GAGGCGATCG CGGTCGACGT CGCGCCCAGC
CTCTTGCGCG TGCTGCCGGC GCTGCTGGCC GGCGTGCGCC GCCTGTGCGA CCTGTCGTGC
GACCCGCAGG CGGTGGCCGC GGTGCTCGGC CCGCTGGCTG CCGATGCGCC GGGTCTGCGC
GTGCCGGGCG CGTTCGACGG CTTCGAGATG GCGGTGCGGG CCGTGCTCGG CCAGCAGGTC
ACGGTCAAGG CAGCGCACAC GCTGGCCGGC CGAATGGCGG CCGCGTTCGG CGAGCCGCTG
CGATCGGAGC AGTCGTTGGA CGGCGTCGGC CTGCTGTTCC CGACGCCGCA GCGGCTGGCG
TCGGCCGGCG CCGAGCAGAT CGCCGCGCTG GGTATCGTGC GCAGCCGCGC CGATGCGTTG
ATCGCGCTGG CGCAGGCGGT GTCGAGCGGC GAGATCGATC TCGGCCCGGC CGCCGACGTG
GCCCTGTGCA CCGAGCGCCT GCAAGCCCTG CCGGGCATCG GCCGCTGGAC CGCGCAGTAC
ATTGCGCTGC GCGCGCTCGG CTGGCCCGAC GCCTGGCCGA GCGGCGACGT CGCACTGATC
AAGGCGCTCG GCGCCGCCGG CCCGCGCGAG GCCGATGCGC TGGCCGAAGC CTGGCGCCCC
TGGCGCAGCT ACGCCACCGT GCAACTCTGG CGCCGGCTCG CCGAAGCGGC CACCGCCCCG
AAACCATGA
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| Protein sequence | MIVCMPSRSA PLASTDATAH AACYAALVAR DRRFDGRFFV GVTSTGIYCR PVCGVRTPKA
ANCRFFDNAA AAEAGGFRPC LRCRPELAPG LAGIDMPSRL AWAAAQRIEA GALDDGGLTG
LSARLGITDR HLRRIFMAAF GVTPIDYAQT QRLLIAKRLL ADTTLPVTEV ALAAGFGSLR
RFNHLFQSRY RLTPGELRRA SGPAAREGGL HFELAFRPPL DWPRLLAFLA ARCVAGVEAV
ADGTYRRSVR LHAGGSEHTG WLALGLAAHG EAIAVDVAPS LLRVLPALLA GVRRLCDLSC
DPQAVAAVLG PLAADAPGLR VPGAFDGFEM AVRAVLGQQV TVKAAHTLAG RMAAAFGEPL
RSEQSLDGVG LLFPTPQRLA SAGAEQIAAL GIVRSRADAL IALAQAVSSG EIDLGPAADV
ALCTERLQAL PGIGRWTAQY IALRALGWPD AWPSGDVALI KALGAAGPRE ADALAEAWRP
WRSYATVQLW RRLAEAATAP KP
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