| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1099 |
|---|
| Symbol | |
|---|
| ID | 6160935 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 1171664 |
|---|
| End bp | 1173442 |
|---|
| Gene Length | 1779 bp |
|---|
| Protein Length | 592 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641663853 |
|---|
| Product | putative bifunctional OHCU decarboxylase/allantoate amidohydrolase |
|---|
| Protein accession | YP_001790133 |
|---|
| Protein GI | 171057784 |
|---|
| COG category | [E] Amino acid transport and metabolism
[S] Function unknown |
|---|
| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases
[COG3195] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR01879] amidase, hydantoinase/carbamoylase family
[TIGR03164] OHCU decarboxylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 0.581105 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGCTGACCA CAGCCCATCT CAACACCCTC CCCCAAAGCG CCTTCACGCA AGCGCTGGAC
GGCATCTACG AACACTCCCC CTGGATCGCC GAATCCACCT GGCACAAACG CCCATTCACC
ACCCTCGCCG CGCTGAAGCA GGCCATGGCC ACCGTGGTGC GAGAAGCCGG CCCACAAGCC
CAACTGACGC TCATCCGCGC CCACCCCGAA CTCGCAGGCA AGGCGATGGT CAGCCAATCG
CTCACGGCCG AGTCCACCAA CGAACAAGGC AAGGCCGGCC TCACCGACTG CACGCCGCAG
GAGTTCGCCC GCATCCAGCA GCTCAACGCC GCCTACAACG AGAAGTTCGG TTTCCCGTTC
ATCCTGGCCG TGCGTGGCCC GCGTGGCCTG GGCCTGCCTC GCAGCGAGAT CATCACCACC
TTCGAGCGCC GCCTGCACAA CCCGGTCGAC CACGAACGCG CCGAAGCGCT GCGCAACATC
CACCGCATCG CCGAGATCCG CCTGAACGAC AAGTTCGGCG TCGAGCCCAC GCTCGGCAAT
CAGGTGTGGG ACTGGGCCGA AGCACTCGCC GCACACAGCG ACCCCGGCTA CGCCGAACAA
GGCCAGCTCA CCGTCACCTA CCTGACCGAC GCCCACCGCG CCTGCGCGCA GCAGCTGTCG
CAATGGATGC GCGATGAATG CGGCTTCGAT GAGGTCTCCA TCGACGCCGT CGGCAATGTG
GTCGGCATCT ATCACGGCAG CGATCCGACG ACCCGAAGGC TGCTGACCGG CAGCCACTAC
GACACCGTGC GCAATGGCGG CAAGTACGAC GGCCGGCTCG GCATCTTCGT GCCGATGGCC
TGCGTGCGCG AACTGCACCG CGCCGGCAAG CGGTTGCCCT TCGGGATCGA GGTGATCGGA
TTTGCCGAAG AAGAGGGCCA GCGCTACAAG GCGACGTTCC TCGGCTCGGG CGCCGTGATC
GGCCAGTTCG ACAACGCCTG GCTCGACCAG GCCGATGCCG ACGGCATCAC GATGCGCGCG
GCCATGCAGC ACGCCGGTCT GTGCATCGAC GACATCCCCA AGCTCGCCCG CAACCCGGCG
GATTACCTCG GTTTCATCGA GGTCCACATC GAACAGGGGC CGGTGCTCAA CGAGCTCGAC
CTGCCGCTGG GCATCGTGCG CTCGATCAAC GGCAGCGTGC GCTACACCGG CGAAGTGATC
GGCATGGCCA GCCACGCCGG CACCACGCCG ATGGACCGCC GCCGCGACGC CGCGGTGGCC
GTGGCCGAAC TGGCGGTCTA TCTCGAACGC CGTGCCGCGG CGGTGCCCGA TCTGGTCGGC
ACCATCGGCA TGCTGAACGT GCCCGGCGGC TCGATCAACG TGGTGCCGGG CCGCTGCCGG
TTCAGCCTCG ACCTGCGCGC CACCACCGAC GCCGCACGCG ACGCACTGGC CGCCGACACG
CTGTCCGAGC TGACGCGCAT CTGCGAGCGG CGTGGCCTGA ACCACACGCT CGAAGAAACG
ATGCGCGCCT CGGCCGCACC GAGCGCACCG GCCTGGCAAG CGCGCTGGGA GGCCGCCGTC
GCCGCACTCG GGCTGCCACT GCACCGCATG CCCAGCGGCG CCGGCCACGA CGCCATGAAG
CTGCACGAGG TGATGCCGCA GGCCATGCTG TTCGTGCGCG GCCTGAACGC CGGCATCAGC
CACAACCCGC TCGAATCGAG CACCAACGAC GACATCGACC TGAGTGTCCA GGCCTTCTCG
CTATTGCTGA ACCAGCTCGC CAAGGAGATC ACCGCATGA
|
|---|
| Protein sequence | MLTTAHLNTL PQSAFTQALD GIYEHSPWIA ESTWHKRPFT TLAALKQAMA TVVREAGPQA
QLTLIRAHPE LAGKAMVSQS LTAESTNEQG KAGLTDCTPQ EFARIQQLNA AYNEKFGFPF
ILAVRGPRGL GLPRSEIITT FERRLHNPVD HERAEALRNI HRIAEIRLND KFGVEPTLGN
QVWDWAEALA AHSDPGYAEQ GQLTVTYLTD AHRACAQQLS QWMRDECGFD EVSIDAVGNV
VGIYHGSDPT TRRLLTGSHY DTVRNGGKYD GRLGIFVPMA CVRELHRAGK RLPFGIEVIG
FAEEEGQRYK ATFLGSGAVI GQFDNAWLDQ ADADGITMRA AMQHAGLCID DIPKLARNPA
DYLGFIEVHI EQGPVLNELD LPLGIVRSIN GSVRYTGEVI GMASHAGTTP MDRRRDAAVA
VAELAVYLER RAAAVPDLVG TIGMLNVPGG SINVVPGRCR FSLDLRATTD AARDALAADT
LSELTRICER RGLNHTLEET MRASAAPSAP AWQARWEAAV AALGLPLHRM PSGAGHDAMK
LHEVMPQAML FVRGLNAGIS HNPLESSTND DIDLSVQAFS LLLNQLAKEI TA
|
|---|
| |