| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1086 |
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| Symbol | |
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| ID | 6161525 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 1159031 |
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| End bp | 1160149 |
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| Gene Length | 1119 bp |
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| Protein Length | 372 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641663840 |
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| Product | urea ABC transporter, permease protein UrtC |
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| Protein accession | YP_001790120 |
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| Protein GI | 171057771 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4177] ABC-type branched-chain amino acid transport system, permease component |
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| TIGRFAM ID | [TIGR03408] urea ABC transporter, permease protein UrtC |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGCAG TCTTGAACAA CCCGATGCTG ATGCCGCGCA GCGGCTTGTT GCTGGGCCCG
CGGGGCTGGG CCGGCGTGAT GGCCGCGCTG GCCACCGTGC TGGTGCTGGT GCCGCTGCTC
AACCTGGCGG TGCCCGATGG CCATCCGCTG CACTTCAGCG ACTACTACGT GCAGCTCACC
GGCAAGATCA TGTGCTACGC GATCTGCGCG TTGGCGATGG ACCTGATCTG GGGCTACACC
GGCATCCTGT CGCTGGGCCA CGGCCTGTTC TTCGCGCTCG GCGGCTACGG CATGGGCATG
TACCTGATGC GCCAGATCGG GCTCGACGGC AACTACAAGA GCACGCTGCC CGACTTCATG
GTCTTCCTCG ACTGGAAGAC GCTGCCCTGG CACTGGAGCT TCAGCGAGAG CTTCTTCGGC
CAGATGCTGC TGGTGGTGCT GGTGCCCGGC CTGCTGGCGC TGGTGTTCGG CTTCTTCGCT
TTCCGCTCGC GCATCAAGGG CGTGTACTTC TCGATCATCA CGCAGGCGAT GACGTTCGCG
GCGATGCTGC TGTTCTTCCG CAATGAGACC GGCTTCGGCG GCAACAACGG CTTCACCGAC
TTCAAGCGCA TCCTCGATAT CCCGCTGGCC CAGCCGAGCA CGCGCATGAC GCTGTTCATG
CTGACCGGCG TGGTGCTGGT CGGCTTCTTC CTGATGGCGC GTGCGATCGT CAACAGCAAG
TACGGCCGCG TGCTCCAGGC GATCCGCGAT GCCGAGAGCC GCGTCATGTT CACCGGCTAC
GACCCGCTGG CCTACAAGCT CAGCATCTGG ACGCTGAGCG CCGTGATGTG CGCGGTGGCC
GGCGCCTTGT ACGTGCCGCA GGTCGGCATC ATCAACCCGG GCGAGATGAG CCCGGCGGCA
TCGATCGAGA TCGCGATCTG GGCCGCAGTC GGTGGCCGGG CCACGCTGAT CGGGCCGATC
CTCGGCGCCT TCTTCGTCAA CGGCGCCAAG AGCTGGTTCA CGCAGGTGTT CCCGGAGTTC
TGGCTGTACT TCCTGGGCGC GCTGTTCATC GCGGTGACGC TGTTCCTGCC GCACGGCATT
GTGGGCCTGT TCAAGAAGCG CAAGGAGGGC AAGGCATGA
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| Protein sequence | MSAVLNNPML MPRSGLLLGP RGWAGVMAAL ATVLVLVPLL NLAVPDGHPL HFSDYYVQLT
GKIMCYAICA LAMDLIWGYT GILSLGHGLF FALGGYGMGM YLMRQIGLDG NYKSTLPDFM
VFLDWKTLPW HWSFSESFFG QMLLVVLVPG LLALVFGFFA FRSRIKGVYF SIITQAMTFA
AMLLFFRNET GFGGNNGFTD FKRILDIPLA QPSTRMTLFM LTGVVLVGFF LMARAIVNSK
YGRVLQAIRD AESRVMFTGY DPLAYKLSIW TLSAVMCAVA GALYVPQVGI INPGEMSPAA
SIEIAIWAAV GGRATLIGPI LGAFFVNGAK SWFTQVFPEF WLYFLGALFI AVTLFLPHGI
VGLFKKRKEG KA
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