| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1085 |
|---|
| Symbol | |
|---|
| ID | 6161524 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 1157448 |
|---|
| End bp | 1159034 |
|---|
| Gene Length | 1587 bp |
|---|
| Protein Length | 528 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641663839 |
|---|
| Product | urea ABC transporter, permease protein UrtB |
|---|
| Protein accession | YP_001790119 |
|---|
| Protein GI | 171057770 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0559] Branched-chain amino acid ABC-type transport system, permease components |
|---|
| TIGRFAM ID | [TIGR03409] urea ABC transporter, permease protein UrtB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGATTC GATTCTTGAT GGCCGTGGTG ATGGCAGCCG GACTTCTGGC GCCCGCCCAC
GCATTCACTC CCGAACAGGC CCATGCGATT GCCGCCGGCG AGACCGACGA CCGCATCCAG
GCCCTGAACC AGGCCGCCGC CACCGGCGAT GCCGCACTGG CCGCCTACGT GCAGGCGGTG
CTCGACGATG CCGTCAAGGT GGCCGGTGGC AAGGCCTATC TGCAGCGCGA CGGCAAGGTG
CTGATCGCGG GCACCGACAC CGAAGCCGCG CTGCCCGATG ACGCCGAAGA CGTCGTCAAC
AACAACCGCA TGCGCGGTGC GCTCGAAGCG TCGCTCGGCA CGCTCAAGCT GGTGTCGCCT
GACGTGAACG TGCGCCGCGC CGCACTCACC GAACTGGCCA AGCAGCAGCT CGACGAAGCC
CAGCTGCCGA TGATCGACAA GGCCTGGGCG GCCGAGACCG ACACGGCGCT GAAGTCGCAG
CTCGAGAGCA TGCGCGCCAC CATCCTGATC ACCTCCACCG ACCAGGCCAA GCGCCTCGAA
GCCGCGCAGC TGCTCGAAGG CAGCCGGCTC GCTTCGGTCA AGAGCCTGCT GCAGGAGCGC
CTGGCCGCCG GCGGCGAAAC CGATGGCGAA GTGCGTGCCG CGCTGATGAA GGCGCTGTCA
GCGGTCGAAG GCCGGCTGGC CTGGGGCGAG CGCCTGGGCG TGCTGTTCAC CGGCATCAGC
CTGGGCTCGA TCCTGCTGCT GGTGGCGCTC GGCCTGGCCA TCACCTACGG CCTGATGGGC
GTCATCAACA TGGCGCACGG CGAGCTGATG ATGATCGGCG CCTACGCCAC CTGGCTGGTG
CAGAACCTGT TCCGCCAGCA CCTGCCGGGG CTGTTCGACT GGTACATCGC GTTCGCGATC
CCCGCCTCGT TCCTGGCCGC CGCGCTGGTC GGCGCCGCGC TCGAACGCAG CGTGATCCGC
TGGCTCTACG GCCGCCCGCT CGAGACCCTG CTGGCCACCT GGGGCATCAG CCTGGTGCTG
ATGCAGGGCG TGCGCAGCCT GTTCGGCGCG CAGAACGTGC AGGTCGAAAA TCCGTCGTGG
CTGTCGGGTG GCGTGGTCGC GCTCGACAAC CTCACGCTGC CGTACAACCG GCTCGCCATC
ATCGCCTTCG CCTTCATGGT GCTGGCCGGC GTGGCGCTGC TGATCGCCCG CACCCGGCTC
GGCCTGTTCG TGCGCGGCGT TACTCAAAAC CGCCGCATGG CCGCCTGCAT GGGCGTCAAC
ACCGCGCGCA TCGACACCTA TGCGTTTTCG CTGGGCGCCG GCATCGCCGG GCTGGCGGGC
TGCGCGCTCA GCCAGGTCGG CAACGTCGGG CCGGATCTCG GCCAGAGCTA CATCGTCGAC
GCCTTCATGG TGGTCGTCAC CGGCGGTGTC GGGCAGCTGG CCGGCACGGT CTACGCCGGC
CTGGGGCTGG GCGTGTTGAA CAAGTTTCTC GAGGGCTATT CGGGTGCGGT GCTGGCCAAG
ATCATGGTGC TGGTGTGCAT CGTGGTCTTC ATCCAGAAGC GCCCGCAAGG CATGTTTGCG
ATGAAGGGCC GGAGTGCTGA AGCATGA
|
|---|
| Protein sequence | MLIRFLMAVV MAAGLLAPAH AFTPEQAHAI AAGETDDRIQ ALNQAAATGD AALAAYVQAV
LDDAVKVAGG KAYLQRDGKV LIAGTDTEAA LPDDAEDVVN NNRMRGALEA SLGTLKLVSP
DVNVRRAALT ELAKQQLDEA QLPMIDKAWA AETDTALKSQ LESMRATILI TSTDQAKRLE
AAQLLEGSRL ASVKSLLQER LAAGGETDGE VRAALMKALS AVEGRLAWGE RLGVLFTGIS
LGSILLLVAL GLAITYGLMG VINMAHGELM MIGAYATWLV QNLFRQHLPG LFDWYIAFAI
PASFLAAALV GAALERSVIR WLYGRPLETL LATWGISLVL MQGVRSLFGA QNVQVENPSW
LSGGVVALDN LTLPYNRLAI IAFAFMVLAG VALLIARTRL GLFVRGVTQN RRMAACMGVN
TARIDTYAFS LGAGIAGLAG CALSQVGNVG PDLGQSYIVD AFMVVVTGGV GQLAGTVYAG
LGLGVLNKFL EGYSGAVLAK IMVLVCIVVF IQKRPQGMFA MKGRSAEA
|
|---|
| |