| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1081 |
|---|
| Symbol | |
|---|
| ID | 6162279 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 1149365 |
|---|
| End bp | 1150930 |
|---|
| Gene Length | 1566 bp |
|---|
| Protein Length | 521 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641663835 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001790115 |
|---|
| Protein GI | 171057766 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCAATC TGCGTGCACT GTCTGCCGCC ATCCTGATCG CCTTCGGCCT GACCGCTTGC
GGCGGGGGCT CGACCTCCTC GTCGAGCGGC GTGCTGGTCG ACGACCTGGT GGTCGACGCC
ACCGTGTTCT GCGACAGCAA CAGCAACGGC ACATGGCAGA GCGGTGAGGC GCAGGCCAGC
ACCGACGACA GCGGCGCCTT CACCTTCAGC CCGGCCTGCG AGGCGCCGGT GGTGTCGCTG
GCCGGCACCG GCTACGACAA GACCACGCTG AAGGCGCCGC GTGGCCATTT CCGGGCCCGC
GCGCACGCGC CGGTGGTGTC GCCCTTCACC ACCATGCAGC TCGCCAGCGG CTTGAGCGAG
ACCCAGTTCC GCACCGTGCT GGCCAAGCTC GGGCTCGACA ACGTCGATGC GAGCACCTTC
AACCCGGCCA CGCACACCCG ACTCGGCCCG ACCGCCGCGG CGGTGATCAA GATCCTCAAC
GAGATCGCCG AGATCGTCGA ATCCGCCGGC GGCGACCCGG CCGTGGCGTT CGAGGCGGCG
GCGGGCGCGA TCGTCAGCTA CGTGAACGCG CACACCACCA GCGGCTCGAT CCTCGAACGC
GACCTCGACC TGGGCGACCT GATCGAAGCC GCCGCCACGG CCGGTTTTGC CAGCGTGCCC
ACCGCCACCT GGACCGACAC GGCCCGCGCC AACGCCGCCC GCCTGGCGCG CGAAGGCCTG
GTGCTGCTGG TCAAGTCGAT CAAGGGCAAG AACAGCTATG CGGACATCCG CGACGACTTC
AACAACGGCG CGGTCAACGG CATCATTTCC GACACCAACC TCGACGACGA CAACGAGGTC
GAGATCGCCC GCGGCCGCTG CCGCGACAAC GACAACATCG GCCGCGCCCA GTACGTCTAC
GCCAGCGACG ACAGCTTCAC GCTGGTCGGC CCCAGCCTGG CCGGCGGCCG TACCAGCTAC
GACCTGACGG CGTTCGGCGC CGGCATCGAC CTCACCGGCC ACAGCCTGGG CAGCCTGACG
CGCCTGGAAC TGCCGCTGCA GGCCAGCACG CTGGCGCTGC CGAAAAACGG CTCGCGCATC
GCGGTGGCGC TGGAGGTCGA GGAGGTCGCC GGCGGCGGCG ACCGGCTGCT GCAGGTGCTG
ATCGACCGCC TGGTGCTCAA GCGCGACAAG GTCACCGGCA TCGTCAGCGC CAGCATCACC
GACAAGTCCG AGCTGTATTT CTATGCCCGC TCATCGAGCG GCGTCGAGAT CGGCACCGGC
CGGGTCGCCT TCGAAGATCT GGACGGCAGC ATGCTGACCA GCAGCCAGAG CGGCGTCGCA
CTCGACCTGC AGGTGCTGGC CGCGCGCATG AAGGGCAAGT ACCCGAACCA GATCCCCCTG
CTCGACAACC TGCTCGACGC CACCGGCACG TTCAACGTGC GGCTGGTCGT CAACGAACTC
GATCTGCGCC ATGCCGACGG CTCGCGCTTC GGGCTGCGCA AGATCAGCGT GAAGATGCCG
GACGGAAGCG GCCGCACGGC CGAGCGCATC ACCGGCACCG CGGTGCTGGG CCGGGTGACG
TTCTGA
|
|---|
| Protein sequence | MPNLRALSAA ILIAFGLTAC GGGSTSSSSG VLVDDLVVDA TVFCDSNSNG TWQSGEAQAS
TDDSGAFTFS PACEAPVVSL AGTGYDKTTL KAPRGHFRAR AHAPVVSPFT TMQLASGLSE
TQFRTVLAKL GLDNVDASTF NPATHTRLGP TAAAVIKILN EIAEIVESAG GDPAVAFEAA
AGAIVSYVNA HTTSGSILER DLDLGDLIEA AATAGFASVP TATWTDTARA NAARLAREGL
VLLVKSIKGK NSYADIRDDF NNGAVNGIIS DTNLDDDNEV EIARGRCRDN DNIGRAQYVY
ASDDSFTLVG PSLAGGRTSY DLTAFGAGID LTGHSLGSLT RLELPLQAST LALPKNGSRI
AVALEVEEVA GGGDRLLQVL IDRLVLKRDK VTGIVSASIT DKSELYFYAR SSSGVEIGTG
RVAFEDLDGS MLTSSQSGVA LDLQVLAARM KGKYPNQIPL LDNLLDATGT FNVRLVVNEL
DLRHADGSRF GLRKISVKMP DGSGRTAERI TGTAVLGRVT F
|
|---|
| |