Gene Lcho_1081 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1081 
Symbol 
ID6162279 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp1149365 
End bp1150930 
Gene Length1566 bp 
Protein Length521 aa 
Translation table11 
GC content69% 
IMG OID641663835 
Producthypothetical protein 
Protein accessionYP_001790115 
Protein GI171057766 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones42 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCAATC TGCGTGCACT GTCTGCCGCC ATCCTGATCG CCTTCGGCCT GACCGCTTGC 
GGCGGGGGCT CGACCTCCTC GTCGAGCGGC GTGCTGGTCG ACGACCTGGT GGTCGACGCC
ACCGTGTTCT GCGACAGCAA CAGCAACGGC ACATGGCAGA GCGGTGAGGC GCAGGCCAGC
ACCGACGACA GCGGCGCCTT CACCTTCAGC CCGGCCTGCG AGGCGCCGGT GGTGTCGCTG
GCCGGCACCG GCTACGACAA GACCACGCTG AAGGCGCCGC GTGGCCATTT CCGGGCCCGC
GCGCACGCGC CGGTGGTGTC GCCCTTCACC ACCATGCAGC TCGCCAGCGG CTTGAGCGAG
ACCCAGTTCC GCACCGTGCT GGCCAAGCTC GGGCTCGACA ACGTCGATGC GAGCACCTTC
AACCCGGCCA CGCACACCCG ACTCGGCCCG ACCGCCGCGG CGGTGATCAA GATCCTCAAC
GAGATCGCCG AGATCGTCGA ATCCGCCGGC GGCGACCCGG CCGTGGCGTT CGAGGCGGCG
GCGGGCGCGA TCGTCAGCTA CGTGAACGCG CACACCACCA GCGGCTCGAT CCTCGAACGC
GACCTCGACC TGGGCGACCT GATCGAAGCC GCCGCCACGG CCGGTTTTGC CAGCGTGCCC
ACCGCCACCT GGACCGACAC GGCCCGCGCC AACGCCGCCC GCCTGGCGCG CGAAGGCCTG
GTGCTGCTGG TCAAGTCGAT CAAGGGCAAG AACAGCTATG CGGACATCCG CGACGACTTC
AACAACGGCG CGGTCAACGG CATCATTTCC GACACCAACC TCGACGACGA CAACGAGGTC
GAGATCGCCC GCGGCCGCTG CCGCGACAAC GACAACATCG GCCGCGCCCA GTACGTCTAC
GCCAGCGACG ACAGCTTCAC GCTGGTCGGC CCCAGCCTGG CCGGCGGCCG TACCAGCTAC
GACCTGACGG CGTTCGGCGC CGGCATCGAC CTCACCGGCC ACAGCCTGGG CAGCCTGACG
CGCCTGGAAC TGCCGCTGCA GGCCAGCACG CTGGCGCTGC CGAAAAACGG CTCGCGCATC
GCGGTGGCGC TGGAGGTCGA GGAGGTCGCC GGCGGCGGCG ACCGGCTGCT GCAGGTGCTG
ATCGACCGCC TGGTGCTCAA GCGCGACAAG GTCACCGGCA TCGTCAGCGC CAGCATCACC
GACAAGTCCG AGCTGTATTT CTATGCCCGC TCATCGAGCG GCGTCGAGAT CGGCACCGGC
CGGGTCGCCT TCGAAGATCT GGACGGCAGC ATGCTGACCA GCAGCCAGAG CGGCGTCGCA
CTCGACCTGC AGGTGCTGGC CGCGCGCATG AAGGGCAAGT ACCCGAACCA GATCCCCCTG
CTCGACAACC TGCTCGACGC CACCGGCACG TTCAACGTGC GGCTGGTCGT CAACGAACTC
GATCTGCGCC ATGCCGACGG CTCGCGCTTC GGGCTGCGCA AGATCAGCGT GAAGATGCCG
GACGGAAGCG GCCGCACGGC CGAGCGCATC ACCGGCACCG CGGTGCTGGG CCGGGTGACG
TTCTGA
 
Protein sequence
MPNLRALSAA ILIAFGLTAC GGGSTSSSSG VLVDDLVVDA TVFCDSNSNG TWQSGEAQAS 
TDDSGAFTFS PACEAPVVSL AGTGYDKTTL KAPRGHFRAR AHAPVVSPFT TMQLASGLSE
TQFRTVLAKL GLDNVDASTF NPATHTRLGP TAAAVIKILN EIAEIVESAG GDPAVAFEAA
AGAIVSYVNA HTTSGSILER DLDLGDLIEA AATAGFASVP TATWTDTARA NAARLAREGL
VLLVKSIKGK NSYADIRDDF NNGAVNGIIS DTNLDDDNEV EIARGRCRDN DNIGRAQYVY
ASDDSFTLVG PSLAGGRTSY DLTAFGAGID LTGHSLGSLT RLELPLQAST LALPKNGSRI
AVALEVEEVA GGGDRLLQVL IDRLVLKRDK VTGIVSASIT DKSELYFYAR SSSGVEIGTG
RVAFEDLDGS MLTSSQSGVA LDLQVLAARM KGKYPNQIPL LDNLLDATGT FNVRLVVNEL
DLRHADGSRF GLRKISVKMP DGSGRTAERI TGTAVLGRVT F