Gene Lcho_1072 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1072 
Symbol 
ID6162342 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp1142783 
End bp1143304 
Gene Length522 bp 
Protein Length173 aa 
Translation table11 
GC content73% 
IMG OID641663826 
Producthypothetical protein 
Protein accessionYP_001790106 
Protein GI171057757 
COG category[S] Function unknown 
COG ID[COG3762] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones52 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCACGCA CCCCGTGGCA GCGCCTCGTG CGCTTCGTTC GACACCTCTG GAGCGACCCC 
GCCGACGTGC CGCGCCGCCT CGGCCGCGAC ACGATCGACC ACGTGCAGGC GCAGGTGCGC 
GCCAGCGAAG GCCGCCACCA CGGCGAGATC CGCGTCTGCA TCGAGGCCGG CCTGCCGCTG 
GCCGACCTGT GGCGCAACGC CAGCGCCCGC GAGCGCGCCG TCGAGCTGTT CGGCGAACTC 
GGTGTCTGGG ACACCGAGGC CAACAACGGC GTGCTGATCT ACCTGCTGCT GGCCGACCGC 
GCGATCGAGA TCGTGGCCGA TCGGGGCCTC GACCGGCAGG TCGGCGCGGC GCAGTGGCAG 
GCCATCGTGG CGCAGATGCA CGACGCCTTT CAGGCCGGCC GGTTCGACGC CGGCCTGCAG 
GCGGCGGTGG CGGCGGTCGA TCACCTGCTG GCCACGCATT TCCCGCGCGG CGAAGGCGCT 
GCCGACGTCA ACGAGCTGCC CGACGCGCCG GTGCTGCGCT GA
 
Protein sequence
MARTPWQRLV RFVRHLWSDP ADVPRRLGRD TIDHVQAQVR ASEGRHHGEI RVCIEAGLPL 
ADLWRNASAR ERAVELFGEL GVWDTEANNG VLIYLLLADR AIEIVADRGL DRQVGAAQWQ 
AIVAQMHDAF QAGRFDAGLQ AAVAAVDHLL ATHFPRGEGA ADVNELPDAP VLR