Gene Lcho_1052 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1052 
Symbol 
ID6163130 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp1121883 
End bp1122866 
Gene Length984 bp 
Protein Length327 aa 
Translation table11 
GC content73% 
IMG OID641663806 
Productquinone oxidoreductase 
Protein accessionYP_001790086 
Protein GI171057737 
COG category[C] Energy production and conversion
[R] General function prediction only 
COG ID[COG0604] NADPH:quinone reductase and related Zn-dependent oxidoreductases 
TIGRFAM ID[TIGR02823] putative quinone oxidoreductase, YhdH/YhfP family 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones77 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTCAAAG CCATCCTGCT CCAGCGAGCG CAAGACAAGT CCACCCTGGC GCAGCTCCAG 
GATCTGGACG ACAGCCAGTT GCCCGACCGC GCCGTGACGG TGCAGGTCGA GTACTCCACC 
CTGAACTTCA AGGACGCGCT GGCCATCACC GGCCGCGGCG CCGTGGTGCG GCAATGGCCG 
CTGGTGCCCG GCATCGACCT GGCCGGCGTG GTCCACGCCA GCAGCGACCC GCTCTGGCAG 
CCCGGCCAGC GCGTCGTCGT CACCGGCTGG GAACTGGGCG AAAGACATTG GGGTGGCCTC 
GGCCAGCGCG CCCGCGTCGA GGCCGACTGG CTGCTCGCGC TGCCACCGGG CCTCAGCACC 
CGCGACGCCA TGGCGCTCGG CACCGCCGGC TTCACTGCCG CGCTGTGCGT GATGGCCTTG 
CGCAAGCACG GCCTGCAGGC GGGCGACGAG GTGCTGGTCA CCGGCTCGGC CGGCGGCGTC 
GGCTCGATCG CGATCGCGCT GCTGGCGAGC CTGGGCTACC GCGTCGTCGC CTCGACCGGC 
CGCCCGCAGG AGAGCGACTA CCTGCGCGAC CTCGGCGCCG CCGAGGTGAT CGACCGCCAG 
CCGCTCGGCG AGCCCGGCAA GCCGCTGCAG GCCGAACGCT GGGCCGGCGT GGTCGACACG 
GTCGGCAGCC ACACGCTGGC CAACGCCTGC GCGCAGACCC GCTTCCACGG CGCCGTGGCG 
GCCTGCGGCC TGGCGCAGGG CGGCGATTTC CCGTCGACCG TGATGCCGTT CATCCTGCGC 
GGCGTCACGC TCTACGGCAT CAACAGCGTC TTCACGCCCA ACGACCAGCG TGCCCTGGCC 
TGGGCGCTGC TGGCCCAACA CATCACGCCC GCCCGACTGC AGAGCCTGAC GACCGAGATC 
GGCCTGAGCG AGGCGATCGC CTACGCGCCG CGCCTGCTGG CCGGCGAGGT GCGCGGCCGC 
ACGGTGGTGG ACGTGTCGCG CTGA
 
Protein sequence
MFKAILLQRA QDKSTLAQLQ DLDDSQLPDR AVTVQVEYST LNFKDALAIT GRGAVVRQWP 
LVPGIDLAGV VHASSDPLWQ PGQRVVVTGW ELGERHWGGL GQRARVEADW LLALPPGLST 
RDAMALGTAG FTAALCVMAL RKHGLQAGDE VLVTGSAGGV GSIAIALLAS LGYRVVASTG 
RPQESDYLRD LGAAEVIDRQ PLGEPGKPLQ AERWAGVVDT VGSHTLANAC AQTRFHGAVA 
ACGLAQGGDF PSTVMPFILR GVTLYGINSV FTPNDQRALA WALLAQHITP ARLQSLTTEI 
GLSEAIAYAP RLLAGEVRGR TVVDVSR