Gene Lcho_1048 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1048 
Symbol 
ID6163461 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp1117226 
End bp1117759 
Gene Length534 bp 
Protein Length177 aa 
Translation table11 
GC content62% 
IMG OID641663802 
ProductBadM/Rrf2 family transcriptional regulator 
Protein accessionYP_001790082 
Protein GI171057733 
COG category[K] Transcription 
COG ID[COG1959] Predicted transcriptional regulator 
TIGRFAM ID[TIGR00738] rrf2 family protein (putative transcriptional regulator)
[TIGR02010] iron-sulfur cluster assembly transcription factor IscR 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones81 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGATTGA CGACCAAGGG ACGATTTGCA GTCACTGCAA TGATCGATCT GGCTTTGCGC 
GAGCACACGG GGCCTGTGGC CTTGGCTGCG ATCAGTGCGC GACAGCAGAT TTCTCTGTCC 
TACCTCGAGC AGCTGTTTGG CAAGCTTCGG CGCCATGAGC TGGTCGAGAG TACGCGGGGG 
CCGGGTGGTG GTTATTCGCT TGGCCGCAAG GCCGAAGACA TCACGGTGGC CGACATCATC 
GTGGCGGTCG ACGAGGCGAT CGACTCGACC GGTTGCGGCG GTGGCGAAAA CTGCATGGGC 
GACGACACCG GTCGCTGCAT GACCCACGAT CTTTGGACCA GCCTGAACGC CAAGATGCTG 
GAGTACCTGC ACTCCATCTC GCTGCGAAGC CTGGTCCAGG ACCAGCTCTC GCGCGGCGTC 
TCGGTGGAAG AAGCGCCCAT CAAGCGTGCG ATCTCGACCC AGCCGGTGGT CAAGCCGATC 
AAGATCACGG CACCGAATTC GGTGTTCGCG CTCGGCATCG CGCTGTCGAA GTGA
 
Protein sequence
MRLTTKGRFA VTAMIDLALR EHTGPVALAA ISARQQISLS YLEQLFGKLR RHELVESTRG 
PGGGYSLGRK AEDITVADII VAVDEAIDST GCGGGENCMG DDTGRCMTHD LWTSLNAKML 
EYLHSISLRS LVQDQLSRGV SVEEAPIKRA ISTQPVVKPI KITAPNSVFA LGIALSK