| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1041 |
|---|
| Symbol | |
|---|
| ID | 6163596 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 1111587 |
|---|
| End bp | 1112312 |
|---|
| Gene Length | 726 bp |
|---|
| Protein Length | 241 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641663795 |
|---|
| Product | DNA polymerase III, epsilon subunit |
|---|
| Protein accession | YP_001790075 |
|---|
| Protein GI | 171057726 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0847] DNA polymerase III, epsilon subunit and related 3'-5' exonucleases |
|---|
| TIGRFAM ID | [TIGR00573] exonuclease, DNA polymerase III, epsilon subunit family
[TIGR01406] DNA polymerase III, epsilon subunit, Proteobacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 79 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCAGA TCTTTCTCGA CACCGAAACC ACCGGCCTGA GCCATGAGAG CGGCGACCGT
GTCGTCGAAC TGGGCTGCGT GGAGATGGTC AACCGCCGCC TGACCGGGCG CAACCTGCAC
CACTATTTCA ACCCGCAGCG TGCCAACCAC GAAGAGGCCG TGCGTGTCCA CGGCCTGACG
GACGCGTTCC TGGCGGACAA ACCGTTGTTC AGCGCCGTGG CGCAGGAGTT CGTCGACTTC
GTGCGCGATG CGGAAATCAT TGCCCACAAC GCGAACTTCG ACGTCGGCTT CCTCGATGCC
GAACTCAAGC GCATCGGCCA CCCGCCGCTC AAGCAACTGG TCGACAAGGT CACCGACTCG
CTGGTGATGG CGCGCGAGCA GTTTCCTGGC AAGGCCAACT CGCTGGACGC CTTGTGCAGG
CGACTCGAAG TCGACAACAC CAGCCGCACG GTGCACGGCG CCTTGCTCGA CGCCGGCCTG
CTGGCCGAGG TCTACATCCG GATGACCCGC GGGCAGAACT CGCTGGTGAT CGACGACAGT
CCGGTGCAAT CTGAACAACA AGTCGAACAA CCGCTGATCG CTGTCGATCT GACGGCTTTC
GTGCTGCCTG TGCTGGTCGC TGAAGACGAA GAGATCGCCG CTCACGAGGC GGTGTTGTCC
GGGCTCGACA AATCCAGCGG CGGAAAAACC CTTTGGCGCT CGATAGGGGC TAGCGTTCAA
GTTTGA
|
|---|
| Protein sequence | MRQIFLDTET TGLSHESGDR VVELGCVEMV NRRLTGRNLH HYFNPQRANH EEAVRVHGLT
DAFLADKPLF SAVAQEFVDF VRDAEIIAHN ANFDVGFLDA ELKRIGHPPL KQLVDKVTDS
LVMAREQFPG KANSLDALCR RLEVDNTSRT VHGALLDAGL LAEVYIRMTR GQNSLVIDDS
PVQSEQQVEQ PLIAVDLTAF VLPVLVAEDE EIAAHEAVLS GLDKSSGGKT LWRSIGASVQ
V
|
|---|
| |