| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1028 |
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| Symbol | |
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| ID | 6159975 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 1095754 |
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| End bp | 1096515 |
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| Gene Length | 762 bp |
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| Protein Length | 253 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641663778 |
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| Product | flagellar biosynthetic protein FliR |
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| Protein accession | YP_001790064 |
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| Protein GI | 171057715 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1684] Flagellar biosynthesis pathway, component FliR |
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| TIGRFAM ID | [TIGR01400] flagellar biosynthetic protein FliR |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 57 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCGGGT TCGACGAAGC CCAGCTGCTG GAGTGGCTGA CGCCGCTGCT GTGGCCGTTC
CTGCGCACGC TGGCGCTGTT CAGCGCCGCG CCGGTGCTGT CGATGCGCAT CGTGCCGGTG
CGGCTCAAGG TGGGCCTGGC ACTGCTGGTG GCCGTGAGCG CGCAGGCCAG TCTGCCGCCG
ATGCCGTCGC TGCCGCTCGA CAGCCCGGGC GCGCTGATGA TGGGGGCGCA GCAGGTGGTG
ATCGGCGTCA CGCTGGGGTT CTCGGCCCGG GTGGTGTTTG CCGCCGTCGA GTTCGCCGGC
GAGTTGATCG GGCTGCAGAT GGGCCTGAAC TTCGCCGGCT TCTTCGACCC CGCCACCGGC
AGCCAGGGCA CCGCAACGGC GCGCTTCTTC AGCACCATCG GCTCGCTGCT GTTCGTGGTG
ATGAACGGCC ACCTGCTGCT GGTGATGGCG GTGGTGCACA GCTTCAATGC GTTTCCGGTC
AGCGACCAGC CCTTGTCGGT GATCACGACG CTGCAGCCGC AGGTCTGGGG CGCCGAGATC
TTCCGGCTCG GCCTTTGGAT CGCGCTGCCG ATCATCGCCA TGCTGCTGTT CGTCAATCTG
GTGCTGGGCG TGATCTCGCG GGTGGCGCAG CAGATCCAGA TCTTCTCGGT GGGTTTCGGC
ATCACGGTGT CGGTCGGGCT GTTCGGCGTG CTGCTGACGC TGCCGATGCT GCAAGGCCCG
CTGATGGCGG CGCTGGAGCG CATGCTGGCG CTGTTCCAGT GA
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| Protein sequence | MIGFDEAQLL EWLTPLLWPF LRTLALFSAA PVLSMRIVPV RLKVGLALLV AVSAQASLPP
MPSLPLDSPG ALMMGAQQVV IGVTLGFSAR VVFAAVEFAG ELIGLQMGLN FAGFFDPATG
SQGTATARFF STIGSLLFVV MNGHLLLVMA VVHSFNAFPV SDQPLSVITT LQPQVWGAEI
FRLGLWIALP IIAMLLFVNL VLGVISRVAQ QIQIFSVGFG ITVSVGLFGV LLTLPMLQGP
LMAALERMLA LFQ
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